Transcript Information: S_Transcript_335024.p3


Annotated TAIR IDAT5G52410.2
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21275981-21279293 | Forward length=761
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2595944444965
Replicate 21.0406976206375
Replicate 30.52196422878115
Condition 2: 8 Hour
Replicate 10.60354878256037
Replicate 20.63316552753943
Replicate 31.2065574116027
Condition 3: 24 Hour
Replicate 11.2365028390902
Replicate 21.2828572590385
Replicate 30.71383144542781


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_335024.p3 GENE.S_Transcript_335024~~S_Transcript_335024.p3 ORF type:3prime_partial len:106 (-),score=31.15 S_Transcript_335024:2-316(-)
ATGGAGAAGCAAACTACAGGCAGACTTCCTAGCAACAAAGTGTTAGAGGAACGCTCCAAGGTTGAGGCGGACTTGCAGCTAGCCAGATCTTCATTTGATGCACTTCGACGGGAGCATGAGGGCTGCCAACAGGAGCTCGAAGCGGTGCAAAGAGAGAGAGTTTCTTTGGAGGAGTCTTTGCGCAATCTATGCGAGAGAGAGTCGTCTTTGAAAGAACGACTCCAAAGCAAGCTTGAAGCAGCCACTGCAGCTAAAGCTGAGATTGATTCCTCTGAAGAGCAACTGAGCAGACTTCATTCTACTCCTACCATATCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_335024.p3 GENE.S_Transcript_335024~~S_Transcript_335024.p3 ORF type:3prime_partial len:106 (-),score=31.15 S_Transcript_335024:2-316(-)
MEKQTTGRLPSNKVLEERSKVEADLQLARSSFDALRREHEGCQQELEAVQRERVSLEESLRNLCERESSLKERLQSKLEAATAAKAEIDSSEEQLSRLHSTPTIS

Click here to download the sequence:
Link to NCBI Protein BLAST