Transcript Information: S_Transcript_33684.p1


Annotated TAIR IDAT5G42310.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16915860-16918238 | Forward length=709
E-Value8E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6405204930055
Replicate 24.931182251776
Replicate 35.4724110922437
Condition 2: 8 Hour
Replicate 17.1084634390443
Replicate 27.0693317474281
Replicate 38.9534774140384
Condition 3: 24 Hour
Replicate 15.1350207819894
Replicate 25.5458652604935
Replicate 35.9774787318483


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33684.p1 GENE.S_Transcript_33684~~S_Transcript_33684.p1 ORF type:complete len:519 (+),score=90.01,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|9.6e-06,PPR_2|PF13041.2|0.00052,PPR_2|PF13041.2|0.00077,PPR_2|PF13041.2|1,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.00021,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0033,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|0.047,PPR|PF01535.16|1.2,PPR|PF01535.16|0.083,PPR|PF01535.16|0.00016,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|8.4,PPR|PF01535.16|0.044,PPR|PF01535.16|0.00043,PPR|PF01535.16|0.0041,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|4,PPR_1|PF12854.3|48,PPR_1|PF12854.3|7e+03,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|40,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|0.0022,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.003,PPR_3|PF13812.2|0.023,ECSIT|PF06239.7|15,ECSIT|PF06239.7|46,ECSIT|PF06239.7|1.8e+02,ECSIT|PF06239.7|8.5,ECSIT|PF06239.7|2.3e+02,ECSIT|PF06239.7|0.016,ECSIT|PF06239.7|2.8e+02,Clathrin|PF00637.16|2e+03,Clathrin|PF00637.16|25,Clathrin|PF00637.16|2.5,Clathrin|PF00637.16|18,Clathrin|PF00637.16|32,Clathrin|PF00637.16|1.1e+02,MRP-S27|PF10037.5|2.2e+03,MRP-S27|PF10037.5|1.4e+02,MRP-S27|PF10037.5|0.0016,MRP-S27|PF10037.5|47 S_Transcript_33684:432-1988(+)
ATGCCGGCAATTGAATTTCTTTCTTCTCCAAAAATGGAATTCCAATTCATTTCCTCAATTTGCACCCGGTATCCCATTTTCTCACAATTTTCTACTAATTTTCCCAGTAACCCAAATAGACCCAGTATCAATGTTTGCTCTTGCATTCCAATTTGTAAATCTCAATCCCCTAAAACTAATGAGAAGATACCCACTTGTGCTGCTACTTCATTTATGGACTACCCACTTGGAAAAGAGCTATCTTTAGAGTATTATAGTGAAAGTATTAGTAACTTATGTAGGAAAGGATGTGTTGATGAGGCTATGTCATGTTTATCAAAAATGCAAGCATTGGGTTTCCACCCTAATATGTTTTGCTATTCTTGTTTGATTGAGGCTCTTTGTAGAGTTGGTAGAACCCTTGAAGCTGATATGGTTTTCCAAGAAATGATGTTTTTCGGGTTGAGACCGAAAGTTGGGCTTTTTAATGTTTTGCTTAGAGGGTTCTTGAGGAAAGGCATGTTAGAGCTTGGGAGTCGAGTTTTGAGGGCAATGGATGAACTTGGTGTTCATAAGAATCAAGAAACATTTGAGATTTTCTTGGATTATTATGTGAGTGCTGGGAGGTTAAGTGATACCTGGCAGGTTATTGGTGAGATGAAGAAGAAAGGGTATCGGTCTAGTTCATTTGTTTTTAGTCGGATTATTGAACTCTATAGAGATAATGGTATGTGGAAGAAGGCAATGGAGATTATAGGGGATATAAGGGAGTCAGGGGTGCCTGTTGATAGACGGATTTATAATAGCATCGTTGATACGTTTGGTAAATATGGTGAGCTCGAACAAGCCTTGGAAGTTCTTGCCAAGATGCGGAAAGACGGTATAATGCCAGATATAATGACATGGAATTCTTTGATAAAATGGCACTGTAAGGCCGGAGATTATATGAAGGCACTTGATTTGTTCACTGAAATGCAAGATCAAGGATTGTATCCTGATCCGAAGATATTTGTTGTCATGATCAGTCGACTAGGTGAGCAAGGGAAGTGGGATCTGTTGAAAGAGAACTTTGAGAAACTGAAGCGTAGAGGCCATAAAAAGAGTGGAGCAATATATGCAGTTCTAGTTGATATATACGGTCAGTATGGGAGATATCAGGGGGCTGAAGATTGCATATCTGCTTTGAGAGCAGAAGGTATTCAGCTGTCATCTAACATATTTTCTGTATTGGCGAATGCATATGCTCAACAGGGATTATGTGAAGAGACTGTTAAGGTACTCCAGATCATGGAAGCAGAAGGTATCGAACCAAACCTTATAATGCTCAATGTCTTGATCAATGCATTTGGCACCGCGGGGAGACATCTCGAAGCACTTTCTGTATTCAACCATATCATGGAAAGTGGAATTACTCCAGATGTTGTTACATACACCACTCTCATGAAAGCTTTTATCAGGGCAAAGAAATTCAGTCAGGTTCCAGAAATGTACCTCCAGATGGAGACGGTTGGATGTACTCCTGATAGGAAGGCCAGGGAAATGCTCCAGACTGCACTAATGTCCCTTGAGCAGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33684.p1 GENE.S_Transcript_33684~~S_Transcript_33684.p1 ORF type:complete len:519 (+),score=90.01,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|9.6e-06,PPR_2|PF13041.2|0.00052,PPR_2|PF13041.2|0.00077,PPR_2|PF13041.2|1,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.00021,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|3.1e-07,PPR|PF01535.16|0.0033,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|0.047,PPR|PF01535.16|1.2,PPR|PF01535.16|0.083,PPR|PF01535.16|0.00016,PPR|PF01535.16|3.9e-08,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|8.4,PPR|PF01535.16|0.044,PPR|PF01535.16|0.00043,PPR|PF01535.16|0.0041,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|4,PPR_1|PF12854.3|48,PPR_1|PF12854.3|7e+03,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|40,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|0.0022,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|9.5,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|0.003,PPR_3|PF13812.2|0.023,ECSIT|PF06239.7|15,ECSIT|PF06239.7|46,ECSIT|PF06239.7|1.8e+02,ECSIT|PF06239.7|8.5,ECSIT|PF06239.7|2.3e+02,ECSIT|PF06239.7|0.016,ECSIT|PF06239.7|2.8e+02,Clathrin|PF00637.16|2e+03,Clathrin|PF00637.16|25,Clathrin|PF00637.16|2.5,Clathrin|PF00637.16|18,Clathrin|PF00637.16|32,Clathrin|PF00637.16|1.1e+02,MRP-S27|PF10037.5|2.2e+03,MRP-S27|PF10037.5|1.4e+02,MRP-S27|PF10037.5|0.0016,MRP-S27|PF10037.5|47 S_Transcript_33684:432-1988(+)
MPAIEFLSSPKMEFQFISSICTRYPIFSQFSTNFPSNPNRPSINVCSCIPICKSQSPKTNEKIPTCAATSFMDYPLGKELSLEYYSESISNLCRKGCVDEAMSCLSKMQALGFHPNMFCYSCLIEALCRVGRTLEADMVFQEMMFFGLRPKVGLFNVLLRGFLRKGMLELGSRVLRAMDELGVHKNQETFEIFLDYYVSAGRLSDTWQVIGEMKKKGYRSSSFVFSRIIELYRDNGMWKKAMEIIGDIRESGVPVDRRIYNSIVDTFGKYGELEQALEVLAKMRKDGIMPDIMTWNSLIKWHCKAGDYMKALDLFTEMQDQGLYPDPKIFVVMISRLGEQGKWDLLKENFEKLKRRGHKKSGAIYAVLVDIYGQYGRYQGAEDCISALRAEGIQLSSNIFSVLANAYAQQGLCEETVKVLQIMEAEGIEPNLIMLNVLINAFGTAGRHLEALSVFNHIMESGITPDVVTYTTLMKAFIRAKKFSQVPEMYLQMETVGCTPDRKAREMLQTALMSLEQR*

Click here to download the sequence:
Link to NCBI Protein BLAST