Transcript Information: S_Transcript_336848.p1


Annotated TAIR IDAT1G77010.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:28942710-28944797 | Forward length=695
E-Value9.7E-266
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.19655096924062
Replicate 20.1955343239957
Replicate 30.081725566101627
Condition 2: 8 Hour
Replicate 10.85049562564637
Replicate 20.72700246687443
Replicate 30.69268633280589
Condition 3: 24 Hour
Replicate 10.29040465497097
Replicate 20.3347682655295
Replicate 30.18627802367146


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_336848.p1 GENE.S_Transcript_336848~~S_Transcript_336848.p1 ORF type:complete len:677 (+),score=111.84,PPR|PF01535.16|0.0037,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.21,PPR|PF01535.16|0.014,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.056,PPR|PF01535.16|0.00026,PPR|PF01535.16|0.00016,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.13,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.00038,PPR|PF01535.16|0.0048,PPR|PF01535.16|67,PPR|PF01535.16|4.1e+02,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|0.23,PPR_2|PF13041.2|4.1e+02,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|6e-12,PPR_2|PF13041.2|9,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|0.0003,PPR_2|PF13041.2|2.9,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|15,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|1.2e+03,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|8,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|6.6,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|8.5e-05,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|32,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|4,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|55,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|0.093 S_Transcript_336848:164-2194(+)
ATGGATTTCGATTTTCGATATTATACTCAGTTGTTACAATCTTGCAATAATACCCATAATAATCAAGGCAAACAGCTCCATACCCTCTTCCTCAAAAAGGGTATATTTTACTCTGCCATAACCATAGCAAACCGTCTTCTACAGATGTATGTGAAATCTGGTGCCATGCGTGATGCAGATAAACTGTTCGACGAAATGCCCCTGAGAAACTGCTTCTCTTGGAATACCATGATTGAGGGCTACATGAAGTTGGGTTACAGAGATAAGTCATTGGAGCTTTTTAGTTGTATGCCCTATAAGGACGAGTTCTCGTGGAATATGGTGATTTCAGGGTGTGCAAAGATGGGTGACTTGGATTCAGCCAGGATTTTGTTTGATCAAATGCCTAGGAAAAATGGGTTTGCTTGGAATTCTATGATTCATGGATATGCTCGTCGTGGGTGTCCTTTAGATTCTTTGAGGATGTTCAAGGATTTGAACTTTGACCTTAACGAAGTGTGGATGAAGGATGGTTTTGTTATGGCAACTGTGATTGGTTCTTGCACTGACTTGTTGGCTCTTGAATGTGGGAAGCAAATCCATGCTCGAATAATCACCAATGAGGTGGAGTTTGATTCGGTGTTGGGAAGTTCACTTGTTAATTTGTATAGCAAGTGCGGGGATTTAGATAGTGCAAGTAATGTTGTGAGATTGATGATGGAAGTTGATGACTTCTCACTTTCTGCATTGATCACAGGCTATGCAAATGCAGGTAGAATGAATGATGCTAGAAGAATTTTCAATAGTATTGTTAGTCCTTGTGTTGTGGTTTGGAATTCATTGATTTCTGGGTATGTCACTAATAGTGACGGGATAGAGGCACTAGTTCTATATAACATGATGAGAAATAATGGTTTCAAACCAGATTGCTCTACCTTTGCTAGTGTTTTGAATGCTTGTGCAGCTACTGGCATTCTTGAACATGGTAAACAACTGCACACTCATGCTTACGAAGTTGGAGTCTCACAGGATGTTGTTGCATGTTCCCTTATTGATATGTATTCCAAATGCAGAAGTCCTGTTGATGCTTGCAAGTTTTTTGATGAGCTTAAGTCTTATGATACTGTTCTCCTTAATTCGATGATCAATGTGTACAATAACTGTGGAAGAGTGCAGGAAGCCAAGCAGATATTTGACAGTATGCCGCATAAAACCTTGATCTCATGGAATTCAATGCTAGTGGGCCTTACTCAAAATGGATATCCCCTTTTAGCTTTGGGCCTCTTTTGCGAGATGAATAGGCTGGCAATGGGAATGGACAAGTATAGTCTTGCCAGTGTGATCAGTGCTTGTGCCAGCATTACTTCATTTGAACTTGGTGAGCAAGTTTTTGCAAAAGCTACCATTGTTGGCCTTGACAATGACCTGATTGTTTGTACCTCACTTATCGATTTCTATTGTAAGTGTGGTTTTATTAACTTGGGTCGAAAATTGTTCAATGGGATCGACAAGTCTGATGAAGCGTCTTGGAATTCCATTTTAACAGGGTATGCCACAAATGGCCATGCTATAGAGGCATTGGATTTGTTCGCCTACATGAGACAAGCTGGAGTGAAACCCAATGCTATTACATTTACAATAGTTCTATCTGCTTGCAATCATTGTGGTCTAATTGAGGAAGCCAGGAAGTGGTTTCATTTGATGCAATCTGATTATAATATAGAACCGGGATATGAACATTACTCCTGTATGGTTGATCTGTTGGCTAGGGCTGGATGCCTAGAAGAAGCAATGGCTCTGATTGCGCAAATGCCTTTTAAGGCAGATGCAAGTATATGGTCTTCAGTTCTGAGAGGGTGCGTGGCCCATGGTAATAGCAGACTGGGTAAGCAGGTAGCAGATATAATCATTGATCTTGATCCTGAAAATTTGACTGCTTATGTGCAGTTATCTGGTATGTTTGCTACTTCAGGCAATTGGGAAGGATCAACTCAAATTAGAGATATGATGAAAAGTAAACACGTTGAAAAGAACCCTGGTATCAGTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_336848.p1 GENE.S_Transcript_336848~~S_Transcript_336848.p1 ORF type:complete len:677 (+),score=111.84,PPR|PF01535.16|0.0037,PPR|PF01535.16|7.3e-05,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.21,PPR|PF01535.16|0.014,PPR|PF01535.16|5.6e-06,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.056,PPR|PF01535.16|0.00026,PPR|PF01535.16|0.00016,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.13,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|0.00038,PPR|PF01535.16|0.0048,PPR|PF01535.16|67,PPR|PF01535.16|4.1e+02,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|0.23,PPR_2|PF13041.2|4.1e+02,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|6e-12,PPR_2|PF13041.2|9,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|0.0003,PPR_2|PF13041.2|2.9,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|15,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|1.2e+03,PPR_3|PF13812.2|0.7,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|8,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|6.6,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|8.5e-05,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|32,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|4,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|55,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|0.0053,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|0.093 S_Transcript_336848:164-2194(+)
MDFDFRYYTQLLQSCNNTHNNQGKQLHTLFLKKGIFYSAITIANRLLQMYVKSGAMRDADKLFDEMPLRNCFSWNTMIEGYMKLGYRDKSLELFSCMPYKDEFSWNMVISGCAKMGDLDSARILFDQMPRKNGFAWNSMIHGYARRGCPLDSLRMFKDLNFDLNEVWMKDGFVMATVIGSCTDLLALECGKQIHARIITNEVEFDSVLGSSLVNLYSKCGDLDSASNVVRLMMEVDDFSLSALITGYANAGRMNDARRIFNSIVSPCVVVWNSLISGYVTNSDGIEALVLYNMMRNNGFKPDCSTFASVLNACAATGILEHGKQLHTHAYEVGVSQDVVACSLIDMYSKCRSPVDACKFFDELKSYDTVLLNSMINVYNNCGRVQEAKQIFDSMPHKTLISWNSMLVGLTQNGYPLLALGLFCEMNRLAMGMDKYSLASVISACASITSFELGEQVFAKATIVGLDNDLIVCTSLIDFYCKCGFINLGRKLFNGIDKSDEASWNSILTGYATNGHAIEALDLFAYMRQAGVKPNAITFTIVLSACNHCGLIEEARKWFHLMQSDYNIEPGYEHYSCMVDLLARAGCLEEAMALIAQMPFKADASIWSSVLRGCVAHGNSRLGKQVADIIIDLDPENLTAYVQLSGMFATSGNWEGSTQIRDMMKSKHVEKNPGISW*

Click here to download the sequence:
Link to NCBI Protein BLAST