Transcript Information: S_Transcript_337979.p1


Annotated TAIR IDAT2G22620.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9604902-9610156 | Reverse length=677
E-Value4.2E-273
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.83165628859939
Replicate 20.16415766039818
Replicate 30.21955638194763
Condition 2: 8 Hour
Replicate 10.31734211781448
Replicate 20.49937162142247
Replicate 30.91988032819116
Condition 3: 24 Hour
Replicate 10.16253633549549
Replicate 20.16862955041925
Replicate 30.1876640208714


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_337979.p1 GENE.S_Transcript_337979~~S_Transcript_337979.p1 ORF type:complete len:672 (+),score=76.69,Rhamnogal_lyase|PF06045.7|3.4e-74,CBM-like|PF14683.2|1e-53,fn3_3|PF14686.2|6e-28,fn3_3|PF14686.2|9.7e+03 S_Transcript_337979:147-2162(+)
ATGAAGATTCTGGGTTTGGCGATCCTCATTACCATAATTATTGAGCTGTCATTGGTTGGTCATTGTTGTGGCAAAACCCATGGAAGGCCAGTAAACGCAGACAACAATACACCTCCTGAGGTCATCTTAAACGTAACGGACAGAGAAGTGGTAATTGACAATGGAATTCTCCAAATCACAATTGCAAATCCAGAGGGTTATCTTACTGAGATTCGCTATGGTGGACTGAAAAACTTACTTGAAACCCGTAACAGAGGATCTGACAGAGGGTACTGGGATGCTGTTTGGGACACACCAGGTTACAATGGTACTGACTGGTTAATGGGATCAAGCTTCAATGTCATAGTAGAAAATGAGAACCAGGTGGAGGTTTCATTTACAAATAAATGGGATTCGGCCACCTGGAATTCATCACATGGATACTGGAGGCTTCCTGTAAATGTAGATAGAAGGTATATAGTTCTTCGTGGGTCCTCTGGGTTCTACTCCTATGCGATATTAGAGCGTGAGGAAGGATGGCCCTTAGCAAATGTCTACCAAATAAGAGCTGTGTATAAGCTTGATCGCGACCAGTTTCATTACATGGCCATTTCAGATGACAGGCAAAGGATCATGCCTATGCCACAGGATCGTGAGACTGGTTCACCCCTTGCGTTTAAAGAAGCCGTTCTTTTGACAAATCCCACCAATCCAGATCTCAGAGGAGAGGTCGATGACAAATACCAGTACTCATGCGAGGATAAAGACAATAAGGTGCATGGGTGGATATCATTCAATCCACAGATCGGGTTTTGGATGATAACACCCAACAATGAATTCCGTTCTGCTGGTCCTGTTAAGCAAGATCTCACTTCTCATGTTGGCCCCATCACATTAACTATGTTCCACAGTGCTCACTATGCTGGTTATGACGTAACCATGAAATTCCAAGAAGGGGAGCCCTGGAAGAAGGTGTTTGGTCCGTACTTTGTTTATCTGAATTCAGTTTCTGAGGATAGAGATTTCCATCAACTATGGGATGACGCAAAACACCAGATGAACCAGGAAGTTAGAAGCTGGCCTTATGAATTCCCAAAATCAGAAGACTTCCCCAAGTCTATTGAGCGTGGTTTCGTATATGGACGCCTGCTAGTGCGTGACAGGTACAGGAGGAGGACACTAATCCCCGGAAGTGCTGCCTGGATCGGACTGGCTGCACCAGGCGAAGCAGGATCGTGGCAAACTGAAACTAAGGGTTATCAGTTTTGGACTCAAGCTGACCGTTATGGAGGATTTATGATCAAAGGGATCCGGGAAGGTGTTTATGATTTATATGGATGGGTTCCTGGTTTTCTTGGGGATTATGTATATGCCAAGGACATCACGATCAGTCCAGGCTGTGCAATCAGATTGGATGAACTTATATTTGAAGCTCCAAGAAATGGACCAACAGTGTGGCAGATAGGTTTTCCAGACCGCACAGCGCTTGAGTTCTATGTACCTCAACCAAATACATTGTTTGTGAATAAACTTTACACTGATAGTGATCTAAACAAGTTCAGACAATATGGCCTTTGGGACCGATATGCTGAACTGTATCCTGAGAATGATCTCATATACACAGTGGGTGTCAGTGACTATCACACAGACTGGTTTTTTGCGCAAGTTACTAGGAAGTCGGAGAATAATACATACAAGGCAACCACATGGCAGATTATATTTCCACTCAAAGAAGTAATCCCGTCTGCAAATTATACCTTGCGAATTGCCTTGGCATCTGCTACTAGGTCTGAATTGCAAGTTCGATTCAACGATCCAGACTTGAGCATTCCACACTTCACTACAATGTTAATAGGCACGGACAATGCTATTGCAAGACACGGAATCCACGGATTGTACAGGTTGTACAATGTTGATGTTCCGAGTGAATGGCTTGAAGTTGGAAACAACACAATATATCTGAGGCAATCGAAACATGACACCCCTTTCAATGGGGTCATGTATGATTATATCCGACTAGAAGGTCCCCCCCCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_337979.p1 GENE.S_Transcript_337979~~S_Transcript_337979.p1 ORF type:complete len:672 (+),score=76.69,Rhamnogal_lyase|PF06045.7|3.4e-74,CBM-like|PF14683.2|1e-53,fn3_3|PF14686.2|6e-28,fn3_3|PF14686.2|9.7e+03 S_Transcript_337979:147-2162(+)
MKILGLAILITIIIELSLVGHCCGKTHGRPVNADNNTPPEVILNVTDREVVIDNGILQITIANPEGYLTEIRYGGLKNLLETRNRGSDRGYWDAVWDTPGYNGTDWLMGSSFNVIVENENQVEVSFTNKWDSATWNSSHGYWRLPVNVDRRYIVLRGSSGFYSYAILEREEGWPLANVYQIRAVYKLDRDQFHYMAISDDRQRIMPMPQDRETGSPLAFKEAVLLTNPTNPDLRGEVDDKYQYSCEDKDNKVHGWISFNPQIGFWMITPNNEFRSAGPVKQDLTSHVGPITLTMFHSAHYAGYDVTMKFQEGEPWKKVFGPYFVYLNSVSEDRDFHQLWDDAKHQMNQEVRSWPYEFPKSEDFPKSIERGFVYGRLLVRDRYRRRTLIPGSAAWIGLAAPGEAGSWQTETKGYQFWTQADRYGGFMIKGIREGVYDLYGWVPGFLGDYVYAKDITISPGCAIRLDELIFEAPRNGPTVWQIGFPDRTALEFYVPQPNTLFVNKLYTDSDLNKFRQYGLWDRYAELYPENDLIYTVGVSDYHTDWFFAQVTRKSENNTYKATTWQIIFPLKEVIPSANYTLRIALASATRSELQVRFNDPDLSIPHFTTMLIGTDNAIARHGIHGLYRLYNVDVPSEWLEVGNNTIYLRQSKHDTPFNGVMYDYIRLEGPPP*

Click here to download the sequence:
Link to NCBI Protein BLAST