Transcript Information: S_Transcript_33852.p1


Annotated TAIR IDAT5G60790.1
Annotated Gene NameABC transporter family protein
Annotated Gene Symbol(s)ATGCN1, GCN1
Annotation TypeOrtholog
Chromosome Positionchr5:24453760-24455767 | Reverse length=595
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 164.569248898471
Replicate 268.128315891461
Replicate 362.996648440555
Condition 2: 8 Hour
Replicate 196.742903316472
Replicate 293.621685514683
Replicate 385.10455399962
Condition 3: 24 Hour
Replicate 177.938377163163
Replicate 269.00471989639
Replicate 374.726414720374


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33852.p1 GENE.S_Transcript_33852~~S_Transcript_33852.p1 ORF type:5prime_partial len:671 (+),score=143.97,ABC_tran|PF00005.23|1e-20,ABC_tran|PF00005.23|3.8e+03,ABC_tran|PF00005.23|4.6e-22,AAA_21|PF13304.2|0.055,AAA_21|PF13304.2|0.011,AAA_21|PF13304.2|0.0034,AAA_21|PF13304.2|1.2e-07,ABC_tran_Xtn|PF12848.3|5e+03,ABC_tran_Xtn|PF12848.3|7e+03,ABC_tran_Xtn|PF12848.3|7.3e-23,SMC_N|PF02463.15|0.12,SMC_N|PF02463.15|0.97,SMC_N|PF02463.15|0.036,AAA_29|PF13555.2|0.15,AAA_29|PF13555.2|0.0026,AAA_15|PF13175.2|3.2,AAA_15|PF13175.2|17,AAA_15|PF13175.2|12,AAA_15|PF13175.2|1.9,AAA_17|PF13207.2|0.48,AAA_17|PF13207.2|0.14,AAA_23|PF13476.2|0.17,AAA_23|PF13476.2|8.9e+02,AAA_23|PF13476.2|0.027,MMR_HSR1|PF01926.19|0.82,MMR_HSR1|PF01926.19|0.038 S_Transcript_33852:2-2014(+)
CTGGGGATATATCCTTTCAAAAAAAAAAAACCCCTCTGCATAAATCCCCTCACACCTGGGAGACCACCCCTGCCTTTCTCCCTTGCCCGTCCGATATACAAATATAAGAACCCCTTCTATCCCCAAACCCTAACCCTAGATCGCCAATTTTCACTAATTTTCTCATTCACTCATTCATCACCTGCGATCTTATTTCCGCTCACAGGTAGATTGAAAATGGTGTCCGACGCAAGCAAGAAGAAGGCAGCTCAGAAGAAGGCGGCAGCTGCCGCCAAGAGAGGAGGAAAAGCCGCTGCAGCTGCCGCCTCGTCAAAGGCGGCTGCTACGGCAGCTACGAATGTTGATAAGGTGGCGGATGGAGTCAGGGATCTTATGTTTTCTGATCGGACTTGTACTGCCGTTCTCTGTTCTCATCCTCTCTCTAGGGATATCAGGATAGAGTCTTTATCAGTGACTTTCCACGGACATGATCTGATAGTTGATTCAATGCTTGAGCTGAACTATGGGAGGCGTTACGGTTTGGTTGGGTTGAATGGCTGTGGGAAATCTACGCTACTTACTGCCATAGGATGCCGTGAGCTTCCAATTCCAGAGCACATGGATATTTATCATCTTACCAGAGAGATTGAAGCCTCAGACATGTCTGCGCTTGAGGCTGTAATATGCTGTGATGAGGAAAGGATGAAGTTGGAGCAAGAAGCCGAACAATTGGCAGCACAGGATGATGGTGGTGGGGATAGACTTGAACGTATATACGAGCGTTTGGATGCTCTGGATGCATCAACTGCTGAAAAGCGTGCTGCTGAGATTCTGTATGGTCTTGGATTTAACAAGATGATGCAGGCAAAAAAGACAAAGGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTGGCACGGTCTTTGTTCATGAATCCTACCATTTTATTGCTGGATGAACCTACAAATCATCTTGACCTTGAAGCTTGTGTTTGGCTGGAGGAGAATCTTAAGAAATTTAACCGTATTCTGGTTGTGGTCTCTCATTCCCAAGATTTCTTGAATGGTGTCTGCACAAACATCATCCACATGCAAAGCAAAAAGCTGAAGTTTTATTCAGGTAATTATGATCAATATGTTCAAACTCGTGCTGAACTTGAGGAGAATCAGATGAAACAATACAAATGGGAGCAGGAGCAAATTGCGTCTATGAAAGAGTATATCGCCCGTTTTGGTCATGGTTCAGCCAAGTTAGCCCGGCAGGCACAAAGTAAAGAGAAAACACTTGCAAAGATGGAAAGGGGAGGATTAACAGAGAAGGTTGTCAAAGACAAAGTTCTGGTCTTCCGCTTCACAGATGTGGGAAAGCTTCCCCCTCCAGTTCTGCAGTTTGTGGATGTCTCATTTGGCTATATGCCAGAAAATATCCTATACAAAAACCTTGACTTTGGTGTGGACCTTGATTCTAGGGTTGCACTGGTGGGTCCTAATGGAGCTGGGAAGAGTACCCTTTTGAAGCTAATGACAGGGGACTTGGTTCCTATCGATGGCATGGTGCGTCGTCAAAATCACTTGAGGATTGCCCAGTACCATCAGCATCTTGCAGACAAGCTTGACTTGAATATGTCTGCTTTACAATATATGATGCGGGAGTATCCTGGAACCGAGGAAGAGAAAATGAGGGCAGCAATAGGTAAGTTTGGGCTTTCTGGCAAAGCTCAGGTGATGCCGATGAAGAACCTATCCGATGGGCAAAAGAGCAGAGTTATATTTGCCTGGCTGGCTTACAGGCAACCCCACATGCTGTTACTAGATGAGCCTACTAACCACTTGGATATTGAAACAATTGATTCGCTGGCTGAGGCATTAAATGAATGGGATGGCGGTATGGTTCTTGTTAGCCATGATTTCAGGCTCATAAACCAGGTGGCTCATGAAATATGGGTTTGTGAGAATCAGACTGTCTCACGGTGGGAAGGAGATATCATCGACTTCAAGGAGCACCTGAAGAGAAAAGCTGGACTTGGTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33852.p1 GENE.S_Transcript_33852~~S_Transcript_33852.p1 ORF type:5prime_partial len:671 (+),score=143.97,ABC_tran|PF00005.23|1e-20,ABC_tran|PF00005.23|3.8e+03,ABC_tran|PF00005.23|4.6e-22,AAA_21|PF13304.2|0.055,AAA_21|PF13304.2|0.011,AAA_21|PF13304.2|0.0034,AAA_21|PF13304.2|1.2e-07,ABC_tran_Xtn|PF12848.3|5e+03,ABC_tran_Xtn|PF12848.3|7e+03,ABC_tran_Xtn|PF12848.3|7.3e-23,SMC_N|PF02463.15|0.12,SMC_N|PF02463.15|0.97,SMC_N|PF02463.15|0.036,AAA_29|PF13555.2|0.15,AAA_29|PF13555.2|0.0026,AAA_15|PF13175.2|3.2,AAA_15|PF13175.2|17,AAA_15|PF13175.2|12,AAA_15|PF13175.2|1.9,AAA_17|PF13207.2|0.48,AAA_17|PF13207.2|0.14,AAA_23|PF13476.2|0.17,AAA_23|PF13476.2|8.9e+02,AAA_23|PF13476.2|0.027,MMR_HSR1|PF01926.19|0.82,MMR_HSR1|PF01926.19|0.038 S_Transcript_33852:2-2014(+)
LGIYPFKKKKPLCINPLTPGRPPLPFSLARPIYKYKNPFYPQTLTLDRQFSLIFSFTHSSPAILFPLTGRLKMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAATAATNVDKVADGVRDLMFSDRTCTAVLCSHPLSRDIRIESLSVTFHGHDLIVDSMLELNYGRRYGLVGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALEAVICCDEERMKLEQEAEQLAAQDDGGGDRLERIYERLDALDASTAEKRAAEILYGLGFNKMMQAKKTKDFSGGWRMRIALARSLFMNPTILLLDEPTNHLDLEACVWLEENLKKFNRILVVVSHSQDFLNGVCTNIIHMQSKKLKFYSGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFTDVGKLPPPVLQFVDVSFGYMPENILYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPIDGMVRRQNHLRIAQYHQHLADKLDLNMSALQYMMREYPGTEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQKSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCENQTVSRWEGDIIDFKEHLKRKAGLGE*

Click here to download the sequence:
Link to NCBI Protein BLAST