Transcript Information: S_Transcript_338628.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.25387369425158
Replicate 20.26633153142532
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_338628.p3 GENE.S_Transcript_338628~~S_Transcript_338628.p3 ORF type:3prime_partial len:84 (+),score=17.08,UBN2_3|PF14244.2|7.4e-25 S_Transcript_338628:522-770(+)
ATGGAACTGAATTTGTCCACTAAGAGGAAAATGGGTTTTGTTAATGGCACTGTGGTCAAATCCACAACAAATGCAGTTCAAGCTGAACAGTGGGAAACTTGCAATAACTTGGTAATTTCTTGGTTGCTCAATTCTGTTAGTGATTCCATTGCACAATCTGTGTTGTATATGATTACTGCAAAAGAAATCTGGAAAAATTTGGAGACTAGATTCAATTTGTGTAGTGGAGCTCGAAAATACAAATTGCAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_338628.p3 GENE.S_Transcript_338628~~S_Transcript_338628.p3 ORF type:3prime_partial len:84 (+),score=17.08,UBN2_3|PF14244.2|7.4e-25 S_Transcript_338628:522-770(+)
MELNLSTKRKMGFVNGTVVKSTTNAVQAEQWETCNNLVISWLLNSVSDSIAQSVLYMITAKEIWKNLETRFNLCSGARKYKLH

Click here to download the sequence:
Link to NCBI Protein BLAST