Transcript Information: S_Transcript_338649.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value2E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9897571016957
Replicate 24.1238858986009
Replicate 30.86181009736451
Condition 2: 8 Hour
Replicate 10.79721085297693
Replicate 22.5089923708105
Replicate 34.5819111674259
Condition 3: 24 Hour
Replicate 10.40831557926344
Replicate 21.2708679388606
Replicate 30.94288016467724


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_338649.p1 GENE.S_Transcript_338649~~S_Transcript_338649.p1 ORF type:5prime_partial len:107 (+),score=-2.59,LRR_8|PF13855.2|1.5e-07,LRR_8|PF13855.2|0.14,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|0.0041,LRR_4|PF12799.3|4.9,LRR_4|PF12799.3|37,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|0.1,LRR_1|PF00560.29|0.74,LRR_1|PF00560.29|5.9e+03,LRR_1|PF00560.29|1.1e+02 S_Transcript_338649:2-322(+)
AACCAACTCACAGGTTCAATCCCAAGCACTTTCGGCCAACTTACCGGCCTAGAGAAACTCGACCTCTATTTTAATAAACTTTCGGGGCCGATCCCTGCCTCTCTCTCACATTTGACCAAAGTCAATCGCCTTGACCTTCGGGTAAACCGGCTCACTGGTTCAATCCCGGCTAGCTTCGGCTCATTTAAAAACCCTCAAATGCAACTCTTTCTAGGTACAAACCGGTTGTCCGGTCCCATCCCAAAATCAGTCGGCCAAGCTAACATAAGTCTGTTAGATTTGTCGTTTAACAAGTTCACTGGGGATGCTTCCTTTTTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_338649.p1 GENE.S_Transcript_338649~~S_Transcript_338649.p1 ORF type:5prime_partial len:107 (+),score=-2.59,LRR_8|PF13855.2|1.5e-07,LRR_8|PF13855.2|0.14,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|0.0041,LRR_4|PF12799.3|4.9,LRR_4|PF12799.3|37,LRR_1|PF00560.29|2.5e+03,LRR_1|PF00560.29|0.1,LRR_1|PF00560.29|0.74,LRR_1|PF00560.29|5.9e+03,LRR_1|PF00560.29|1.1e+02 S_Transcript_338649:2-322(+)
NQLTGSIPSTFGQLTGLEKLDLYFNKLSGPIPASLSHLTKVNRLDLRVNRLTGSIPASFGSFKNPQMQLFLGTNRLSGPIPKSVGQANISLLDLSFNKFTGDASFL*

Click here to download the sequence:
Link to NCBI Protein BLAST