Transcript Information: S_Transcript_338652.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value9E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.715012862779
Replicate 23.0238341017914
Replicate 31.685123093933
Condition 2: 8 Hour
Replicate 12.3273903137988
Replicate 21.8170029352062
Replicate 32.3804499863431
Condition 3: 24 Hour
Replicate 10.83165800091095
Replicate 20.46017891525578
Replicate 30.96023011694604


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_338652.p1 GENE.S_Transcript_338652~~S_Transcript_338652.p1 ORF type:complete len:394 (+),score=16.65,LRR_4|PF12799.3|1.7e+02,LRR_4|PF12799.3|0.86,LRR_4|PF12799.3|3.8e-05,LRR_4|PF12799.3|0.00074,LRR_4|PF12799.3|3e+02,LRR_4|PF12799.3|0.15,LRR_4|PF12799.3|3.6,LRR_8|PF13855.2|3.2e-06,LRR_8|PF13855.2|3.3e-10,LRR_8|PF13855.2|1.5e+03,LRR_8|PF13855.2|1.7,LRR_8|PF13855.2|8.7,LRR_1|PF00560.29|9.9e+03,LRR_1|PF00560.29|0.98,LRR_1|PF00560.29|0.66,LRR_1|PF00560.29|12,LRR_1|PF00560.29|0.044,LRR_1|PF00560.29|1.8e+02,LRR_1|PF00560.29|1.4e+02,LRR_1|PF00560.29|3e+03,LRR_1|PF00560.29|1.6e+02,LRRNT_2|PF08263.8|3.5e-09 S_Transcript_338652:160-1182(+)
ATGGGGTTCAGTGGTTGGAACAAAAGCACTGAATGTTGTAGCTGGTTTGGGGTCCAATGTAACAGTCTCAACCGTGTCACTTCACTTAACATTCTTATGGTACCCGATGTTTCATACCTCATTTCACCCGTCATTGGCTACCTCCCTTATCTCGAATCTCTCAAACTCAATTTCTTTTCGGAACTCACCGGTACTTCGAAACTCACCGGTCCAATCCCCGAGTCATTTGCTAGGCTAACTCACCTTAAAACCCTTGACATTGGCGGTCAAAACCTGATCGGCCCAATTCCCGCTTTTTTAAGCCAGCTCAAGAATCTCACTTATCTCGACCTCTCCAGCAACCGGTTCGTAGGCCAAATTCCTTCTACATTGGCCCAGCTCACGGGCCTCACTTATCTCGACCTCAGTCTGAATGATCTCAATGGTTCGATCCCAAGCACTCTTCACCAACTTACTAGCCTAGAAAAACTCGATCTTTCTAACAACGGATTATCCGGCCCAATCCCCGCCTCTCTTTGCTATTTGACCAAACTCACCCGCGTTAACTTTCTAGGGAACCAGCTCACTGGTTCAATTCCGGCTTGTCTCGGCTCGTTTAACAACCCTCAAATGCAACTCTTCCTAGGGACAAACAAGTTATCCGGTCCCATCCCGAAATCTCTTGGTCAGGCTAACATAAATCTGTTAGACCTGTCCTATAACAAGCTAACCGGGGATGCTACATTCTTGTTTGGGAGGGACAAAACTGCATTGGAAAACCTTTACCTTGAAGAAAATCATTTCGAGTTCGATTTCTCCAAGGTGGAATTTCCTGTTGGGCGAAAGAACCTTGATATCAGTAAGAACAAGATATATGGATCACTCCCCAAACAGCTAGGCCAATTGCCATTGAAGTTCCTTGATGTAATTCACAACCAGCTTTGCGGCCCGATTCCGACTGGCCGGAGGTTGAAGCAGTTCATCCCGGACAGATTCTCCCACAACAAGTGCCTATGTGGTCTCCCCTTAGCACCTTGCAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_338652.p1 GENE.S_Transcript_338652~~S_Transcript_338652.p1 ORF type:complete len:394 (+),score=16.65,LRR_4|PF12799.3|1.7e+02,LRR_4|PF12799.3|0.86,LRR_4|PF12799.3|3.8e-05,LRR_4|PF12799.3|0.00074,LRR_4|PF12799.3|3e+02,LRR_4|PF12799.3|0.15,LRR_4|PF12799.3|3.6,LRR_8|PF13855.2|3.2e-06,LRR_8|PF13855.2|3.3e-10,LRR_8|PF13855.2|1.5e+03,LRR_8|PF13855.2|1.7,LRR_8|PF13855.2|8.7,LRR_1|PF00560.29|9.9e+03,LRR_1|PF00560.29|0.98,LRR_1|PF00560.29|0.66,LRR_1|PF00560.29|12,LRR_1|PF00560.29|0.044,LRR_1|PF00560.29|1.8e+02,LRR_1|PF00560.29|1.4e+02,LRR_1|PF00560.29|3e+03,LRR_1|PF00560.29|1.6e+02,LRRNT_2|PF08263.8|3.5e-09 S_Transcript_338652:160-1182(+)
MGFSGWNKSTECCSWFGVQCNSLNRVTSLNILMVPDVSYLISPVIGYLPYLESLKLNFFSELTGTSKLTGPIPESFARLTHLKTLDIGGQNLIGPIPAFLSQLKNLTYLDLSSNRFVGQIPSTLAQLTGLTYLDLSLNDLNGSIPSTLHQLTSLEKLDLSNNGLSGPIPASLCYLTKLTRVNFLGNQLTGSIPACLGSFNNPQMQLFLGTNKLSGPIPKSLGQANINLLDLSYNKLTGDATFLFGRDKTALENLYLEENHFEFDFSKVEFPVGRKNLDISKNKIYGSLPKQLGQLPLKFLDVIHNQLCGPIPTGRRLKQFIPDRFSHNKCLCGLPLAPCK*

Click here to download the sequence:
Link to NCBI Protein BLAST