Transcript Information: S_Transcript_339166.p1


Annotated TAIR IDAT1G56690.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:21253817-21255931 | Forward length=704
E-Value4E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.16342807079641
Replicate 30
Condition 2: 8 Hour
Replicate 10.47389756260296
Replicate 20
Replicate 30.47368550233292
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_339166.p1 GENE.S_Transcript_339166~~S_Transcript_339166.p1 ORF type:3prime_partial len:135 (+),score=21.87,PPR|PF01535.16|11,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|3.7e-07,PPR_2|PF13041.2|3,PPR_2|PF13041.2|7.3e-07,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|4.9e-06,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|0.00018,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|0.18 S_Transcript_339166:618-1019(+)
ATGGGTTGGTCAAACAAATGCAGAAGATACTGTACTGATGTTGCTTTATCTTACAACGCTCAGATTTTCAGACATGCCCGTCATGGTGATATTCATGAATCTCGTCATCTTTTCGACAAAAAGATCGACAAAACAGTGACTTCATGGAACTCTATGATGGCCGGTTACTTCCAAAACCATCGACCCAAGGAAGCACGCCACCTGTTCGACAAAATGCCTGAGAGAAACCTTGTTTCTTTTAACAATTTGGTATCTGGGTATGTGAAAAACAAGATGATAGATGAAGCACGTAAGGTGTTTGATTCAATGCCTGAGAGAAATGTGGTTTCTTGGACATCAATGTTAAGAGGGTATGTGCAAGAGGGTATGATGTCGGAGGCGAGTTTGTTGTTTGAAAGGATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_339166.p1 GENE.S_Transcript_339166~~S_Transcript_339166.p1 ORF type:3prime_partial len:135 (+),score=21.87,PPR|PF01535.16|11,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|3.7e-07,PPR_2|PF13041.2|3,PPR_2|PF13041.2|7.3e-07,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|4.9e-06,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|0.00018,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|0.18 S_Transcript_339166:618-1019(+)
MGWSNKCRRYCTDVALSYNAQIFRHARHGDIHESRHLFDKKIDKTVTSWNSMMAGYFQNHRPKEARHLFDKMPERNLVSFNNLVSGYVKNKMIDEARKVFDSMPERNVVSWTSMLRGYVQEGMMSEASLLFERM

Click here to download the sequence:
Link to NCBI Protein BLAST