Transcript Information: S_Transcript_339298.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value1E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.050260625562192
Replicate 20.020833606758749
Replicate 30.017415237094996
Condition 2: 8 Hour
Replicate 10
Replicate 20.021125447251867
Replicate 30.060384837407879
Condition 3: 24 Hour
Replicate 10
Replicate 20.021401144075871
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_339298.p1 GENE.S_Transcript_339298~~S_Transcript_339298.p1 ORF type:internal len:1059 (-),score=197.91,RVT_1|PF00078.23|2.2e-28,gag-asp_proteas|PF13975.2|1.5e-11,Retrotrans_gag|PF03732.13|1.8e-10,Retrotrans_gag|PF03732.13|1.4e+04,RVP_2|PF08284.7|2e-09,Asp_protease_2|PF13650.2|2.3e-06 S_Transcript_339298:3-3176(-)
TTTCTTCTCTTCGATTCAAGTGAATTGTTCTCACTGGATCAAGCCCTGTTATATTCTGGGAAATTGAGTAGCTCAAATATGGTGGCATCCACAAGAAATTCTGTTATGGATGAGCAGATTAAGGAATTGGATGAAAAATTAGGAGCAAGATGCCAAGTATTGGAACAACAAAATAGGCTCATGGAGCAACAATTAAACAGGATGATGGAAATGTTGCAGAATTTGAGTTCCAATGGTGGCATAGGCTCGAATGGTGGAAGTTCTAATGGGAGCCCTCATGGTGGGAGTTCTTCTGGTGAGTTTTCAATATCCAGATCCTTTCAATTTACCCCTAAAGTTGAATTTCCCTCTTATGATGGAAGCAATACAACTGTTTGGATATTGAAATGTAATAGATATTTTTGTTTATGCAACATACCTGAGAATCAGAAAATAAATCTTGCATCTATTCACATGAGTAGCAAGGCGGCAGTTTGGTTTAATAGCTACATTCTTACTAGACCTAATGTTACATGGGAGGAATTTGTGGTGGATGTTGCTGCTAGGTTTAAGGATGAAATGGAGGATAATGTTGTCGAGAAGTTCAACAGATTACAACAATCTGGGACTTTGGAGGATTATGTGGATGAGTTTGAGTCCCTTAAAGCTCAGATGTTGCATAGGAATGCTTTACTTCCTGCCAATTTTTTTCTGGACAGTTTCATAGCTGGGTTAAAGCCTACTTTGAGACCATTTGTGAAGGCTTTTAATCCTTCCACGTTGGTGGCAGCTATGCATTATGCTAGATTACAGGAAGAATCTGTTAAGGCTGCACAACAACCAGTGAGATCTTTTTCTACAAATTTTTCTCACAGAAATGCATCTTTTCAATCTGCAAGCCAACACAAAACTTCTTACAATTCAAAACCTCTTCTCCCCACTCCTTCTACTTCTTCTTCTTCTTCTCTCTCTTCTTCTTCTATTCCTTCTTCTTCTTCTTCCCAGTCTCTCTCTCAGACTCCAAGGTATATTTCTGCACAAGAAAAGGCTGAAAAACAGACCAAGGGTCTGTGCTATTATTGTGACCAACCCTTTAGTAGAACTCATACATGTCCTAACAAGAGAACACAGTTGTTTTTGGTGGAGGTGGAAGGGTGTGAAGCTGAAGGGGGAGATGGAGAAGGAAACCCCAGTGTGGATGAGAACAATTCTGATGTTACTGAGTTCTATGAGATGCATAGTACTGAACCTGTCATCTCTATCAATGCTGTAAGTGGTGTGCAAGGTCAAAGAACAATGAGGGTCACAGTTTATGTGGGGAAGAAGGCATTGCAGGTACTCATAGATTCTGGTAGTACACATAATTTCTTAGATCTATCTTTAGCTAAGAAATTAGGGTGTAAACTACAACCAATTCCTTCTCAACCAGTAACTGTGGCAGATGGAGCTCAGTTACCCTGCCACTTTGTGTGTAAAGCTTTCAAATGGAGATTGCAGAGGACTGACTTTACCTCAAACATGTTACTATTGTCATTGGGAAGTTGTGACATGGTACTAGGAACTCAATGGTTATGTCAATTGGGAGATATAAGTTGGAACTTCAAGAAGCTTACTATGAAATTTCAATACCAGGGGCAAGATTATGTGTTAAGGGGATTGCAGCCTAAGGGAGTTAAAATGGTAAAGGGAAGCCCTAAACAATTTGGAAATGCAGCTCAATTATGTTTGTTGCAACTCTTACCTTCTAAGGGGTATAGTGAGGAGAAGGAAACAACTTGCTTTACCTTGGAACATCATGACACTTCTCCAGAATTACAATCTTTGCTCACGGATTATAGGGACATATTTGAAGAACCTAAAGATCTTCCACCTAGTAGAGGAAATTTTGATCACAGAATTCCTTTGGCAGCAGGGGCTAATCCAGTCAATGTTAGACCTTATAGATACCCTCTAAAGCAAAGAGATATTATTGAGCAACAAATACAAGACATGCTTGACAGGGGTATTATTCAACACAGTTCAAGTCCTTTTGCTTCACCTGTAGTTCTGGTGGGAAAGAAAGATGGCAGCTGGAGATTATGTGTGGATTATAGAGCATTGAATCACCTGACTATCAAAGATAAGTTTCCAATTCCTGTTGTGGATGAATTAATAGATGAATTAGCAGGGGCTGTTGTATTCAGCAAGATAGACCTGAGATCAGGCTATCATCAAATTAGAATGAGCCCTGATGATGTCTTTAAAACTGCCTTTAAGACTCATTATGGCCATTTTGAATTCTTGGTTATGCCTTTTGGTTTAACCAATGCCCCAGCCACATTCCAAGGTTTTATGAACCATGTTTTTAAAGATTTTCTAAGAAAATTTGTCTTAGTATTCTTTGATGACATTTTGATTTACAGTTCCTCTATGGAGAATCATCTTAACCATCTTCATGCAGTTTTCAAAGTTATGAGGGAGAATATGCTATTTGCAAAAATGAGTAAATGTTTCTTTGGCAGACCTCAAGTGGAATATTTGGGGCATTATATTTCAGAAAGTGGAGTTCAAACAGATCCAAGGAAAGTTAGTGCCATTGAAACATGGCCGGTACCCAGCAATGTTAAGCAACTGAGGAGTTTCTTGGGAATGACTGGTTATTATAGGAAGTTTATTAAGAACTATGCCCTTATTGCCCATCCTCTTACACAGCTTCTGAAGAAGGGAGCTTTTCTTTGGTCTACTCATGCTCAACATGCCTTTCACTCACTCAAATCAGCACTAATGACAGCACCAGTTTTGGCATTGCCTGACTTTAATAAACAGTTCATTGTTGAGACGGATGCTTCACAGAAAGGCATAGGAGCTGTCTTAATGCAGGAGGGTCATCCTTTGGCATTTATTAGCAGGGTCTTAGGCCCCAGGTGGCAGCAACTGTCTGCGTATGAAAAAGAGTTGCTAGCATTGGTGTTTGCTGTGCAAAAGTCGGAGCAGTACTTGTATGGACAACAATTTCTCATACGAACTGATCAAAAGAGCCTTAAGTGGTTATTACAACAAAAAGTGTCCACTCCTTTTCAGCAATTTTGGTTGTCCAAATTGATGGGGTATTCTTATGAAATTCAGTACAAATGTGGCTCTGAAAATAAAGTGGCAGATGCATTATCCAGGGTCCCTAGTACTGAAATTCTTTGTATGGCTGTGTCTTCTATTGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_339298.p1 GENE.S_Transcript_339298~~S_Transcript_339298.p1 ORF type:internal len:1059 (-),score=197.91,RVT_1|PF00078.23|2.2e-28,gag-asp_proteas|PF13975.2|1.5e-11,Retrotrans_gag|PF03732.13|1.8e-10,Retrotrans_gag|PF03732.13|1.4e+04,RVP_2|PF08284.7|2e-09,Asp_protease_2|PF13650.2|2.3e-06 S_Transcript_339298:3-3176(-)
FLLFDSSELFSLDQALLYSGKLSSSNMVASTRNSVMDEQIKELDEKLGARCQVLEQQNRLMEQQLNRMMEMLQNLSSNGGIGSNGGSSNGSPHGGSSSGEFSISRSFQFTPKVEFPSYDGSNTTVWILKCNRYFCLCNIPENQKINLASIHMSSKAAVWFNSYILTRPNVTWEEFVVDVAARFKDEMEDNVVEKFNRLQQSGTLEDYVDEFESLKAQMLHRNALLPANFFLDSFIAGLKPTLRPFVKAFNPSTLVAAMHYARLQEESVKAAQQPVRSFSTNFSHRNASFQSASQHKTSYNSKPLLPTPSTSSSSSLSSSSIPSSSSSQSLSQTPRYISAQEKAEKQTKGLCYYCDQPFSRTHTCPNKRTQLFLVEVEGCEAEGGDGEGNPSVDENNSDVTEFYEMHSTEPVISINAVSGVQGQRTMRVTVYVGKKALQVLIDSGSTHNFLDLSLAKKLGCKLQPIPSQPVTVADGAQLPCHFVCKAFKWRLQRTDFTSNMLLLSLGSCDMVLGTQWLCQLGDISWNFKKLTMKFQYQGQDYVLRGLQPKGVKMVKGSPKQFGNAAQLCLLQLLPSKGYSEEKETTCFTLEHHDTSPELQSLLTDYRDIFEEPKDLPPSRGNFDHRIPLAAGANPVNVRPYRYPLKQRDIIEQQIQDMLDRGIIQHSSSPFASPVVLVGKKDGSWRLCVDYRALNHLTIKDKFPIPVVDELIDELAGAVVFSKIDLRSGYHQIRMSPDDVFKTAFKTHYGHFEFLVMPFGLTNAPATFQGFMNHVFKDFLRKFVLVFFDDILIYSSSMENHLNHLHAVFKVMRENMLFAKMSKCFFGRPQVEYLGHYISESGVQTDPRKVSAIETWPVPSNVKQLRSFLGMTGYYRKFIKNYALIAHPLTQLLKKGAFLWSTHAQHAFHSLKSALMTAPVLALPDFNKQFIVETDASQKGIGAVLMQEGHPLAFISRVLGPRWQQLSAYEKELLALVFAVQKSEQYLYGQQFLIRTDQKSLKWLLQQKVSTPFQQFWLSKLMGYSYEIQYKCGSENKVADALSRVPSTEILCMAVSSIE

Click here to download the sequence:
Link to NCBI Protein BLAST