Transcript Information: S_Transcript_33953.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value7E-159
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23293655348079
Replicate 20.38621951085365
Replicate 30.26231462700964
Condition 2: 8 Hour
Replicate 11.2599245920407
Replicate 21.6399495173541
Replicate 31.6558262362732
Condition 3: 24 Hour
Replicate 10.43020558296575
Replicate 20.27275922028427
Replicate 30.52430945699913


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33953.p1 GENE.S_Transcript_33953~~S_Transcript_33953.p1 ORF type:3prime_partial len:914 (+),score=164.07,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|4.2e-10,PPR_2|PF13041.2|42,PPR_2|PF13041.2|3.9e-08,PPR_2|PF13041.2|19,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|77,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|0.0084,PPR_2|PF13041.2|0.053,PPR_2|PF13041.2|2.4e+03,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|0.016,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|4.3e+02,PPR|PF01535.16|12,PPR|PF01535.16|0.00026,PPR|PF01535.16|2.7,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.034,PPR|PF01535.16|3.1e-06,PPR|PF01535.16|4.3e+03,PPR|PF01535.16|0.32,PPR|PF01535.16|3.2e-08,PPR|PF01535.16|0.044,PPR|PF01535.16|0.00097,PPR|PF01535.16|1.4,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.08,PPR_1|PF12854.3|3.1e+03,PPR_1|PF12854.3|70,PPR_1|PF12854.3|0.05,PPR_1|PF12854.3|4.9e+03,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.036,PPR_1|PF12854.3|0.72,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.0034,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|4.5e-06,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|14,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|0.0061,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|1.1e+02,DYW_deaminase|PF14432.2|1.5e-29,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|4.3e+02,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.4e+03,TPR_14|PF13428.2|7.2e+02,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|47,TPR_14|PF13428.2|1.6e+04 S_Transcript_33953:86-2824(+)
ATGAACTTTCATCGCCTGATTTCCCTCCAAACACCCCCTGCCCAACCACTTTACCGACCATTCAAACTCTGCGCTGTATCGCTCTTGCCAAATTTCATCTTTTACCCTAAACACTTCCAAACCTTGCCCAGTTTTCAACAACAATATCAAACTGATTCCTTTATAAGCTTACCTGTACAAAAGGGCAATCCTTTTTCGACATTCTCTGCATTCCCTTTATCCTTCTTCTCAGACCATTTATCGCGCTGCTGCGAAACCAAATCGCTTGGTCCTGGACTACAAGTCCATGCACAATTAACCAAATCTGGGTTACTGATTGATGCAGGGTTTAGAAACCATTTGATCAATTTATACTCCAAGTGTCGAGTTTTTGGGTATGCCCGGAAGCTGCTCGATGAAAATCCTGAACCAGATTTGGTGTCTTGGTCTGCTCTTATATCTGGGTATGCCCAAAATGGGCTAGGAAAAGAAGCCCTTTCGGCATTTCAGGAAATGCACTTTCTGGGTATTAAGTGTAATGAATTTGGGTTGTCGAGTGTGCTTAAGGCTTGCTCAGTTAAGGAGGATTTGAGGTCTGGGAGGCAAATTCATGGGGTTGTGTTGGTTACTGGTTTTGGGGCTGATGTCTTTGTTTCGAATACGTTGGTAGTTGTTTATGCCAAATGTGGGGAATTTGAGGATTCAAGGAGGTTGTTTGATGAGATTATGGAAAGGAGTGTTGTTTCTTGGAATGCTTTGTTCTCTTGTTATGTGCAGATAAATCATTTTGAGGAGGCAATTAGTTTGTTTGATGAGATGGTTTCGACTTCCATGAAACCTAATGAGTTTAGTCTCTCGAGTATGTTGAATGCCTGTGCAGGGAGAGGGGATAGTAATTTAGGAAGAAAAATTCATGGGTATTTTATAAAGTTGGGTTATGAAGCTGATCAATTCTCGGCAAATGCACTTGTGGATATGTATGCGAAAGTTGGGGCTCTCAAGGATGCCATCCTTGCTTTCGAGAATATTCAAGAACCTGATCTCGTTTCTTGGAATGCCATTATTGCTGGTTCTGTGCTCCATGAGGACCATGACTTGGCCTTGGAATTGTTCAGCCAGATGAAGAATTCAGGAATATATCCAAATTTGTACACATTGTCAAGTGCCCTTAAAGTTTGTGCAGGACTGGCAATGAAAGAACAGGGTAGACAACTCCATTCAATGTTGATTAAGATGGACATGAACAAAGATCTATTTACTGCAGTTGGACTGCTTGATATGTACTGCAAGTGTGCCTTGATGGAAGATGCAGAGACAGTTTTCAAAACAATATCAGAGGACTTGATTGCATGGAATGCTATGATTTCAGGTTATTCTCTAAATGAAGAAAATGAACAAGCTTTAAAAATTTTTGCCGAGATGTACAAAGAGGGAGTAGGATTTAATAAGACCACCTTATCAGCAGTTCTCAAATCCATAACCACCTTGCAGGATGTCAAGGTTTGTCAGCAAGTTCATGTGCTTTCCGTAAAATCTGGTCTCGAATGTGATGATTATGTTGTAAATAGCCTTGTAGACTCGTATGGGAAAAGTGGCTGCATAAAAGATGCAGCGAAAGTATTTCAACAATCGAGGGTAGGAGATTTGGCATCATTTACTTCTATGATCTCTGCTTTTTCTCAGTACGGACAAGGTGAGGAAGCTCTGAAGCTCTTTCAGAATATGCAAGGTATCGGGCTATGGCCAGATCCATTTGCTTGCAGTGCTCTCCTTAATGCTTGTGCAAATTTGTCGGCTTATGAACAAGGCAAACAAGTCCATGTCCATGTACTGAAGCTTGGGCACATGTCAGATGCATTTGCTGGAAATTCCCTGGTTAACATGTATGCCAAGTGTGGATGTATAGATGATGCAACCTGTTCGTTCTCTATGCTAACAGAAAAAGGAATAGTATCATGGTCTGCTATGATCGGAGGACTTGCTCAACATGGACATGGGAAAGAAGCCCTTAGATTCTTCGATGAAATGATTAAGGATGGTGTTCATCCGAATCACGTGACTCTGGTTAGTGTCTTGTGTACTTGTAGTCATGCAGGTTTAGTTGATGAAGCCAAAGAATATTTCCAATCAATGGAACGGTTGTATGGCATAAAGCCTACTCAAGAGCATTATGCGTGTATGATTGATATCCTTGGGCGAGCTGGGAGACTAGACGAAGCAATGGAGCTTGTAAACACGATGCCATATGAAGGAAATGGAGCAGTTTGGGGAGCCCTCCTTGGTGCTGCAAGAATCCACAAGAACGTGGAGCTAGGCCAGCGTGCAGCAGAGATGCTTTTCACCCTTGAACCAGAGAAATCTGGGACACATGTTTTACTCGCAAACCTTTATGCATCAGCTGGAATGTGGGAAAATGTTTCAGAAATGAGGAAACTGATGAAGGAAAATAAGGTGAAAAAGGAGCCCGGAATGAGTTGGGTTGAGGTGAAAAATAAGGTTCATGCATTCATTGTTGGAGATAAAAGCCATCCCAGAAGTAAAGAAATATATGCAAAGCTAACTGAGCTTAAAGATCTCATGATTAAAGCAGGGTATGTTCCTGTGGTGGAGATGGATCTTCATGATGTTGAACGAAGCGAAAAGGAGTTGTTGCTTCTTCATCACAGTGAAAAACTTGCTGTTGCTTTTGCACTATTAGTTACACCACCGGGGGCACCCATTCGGGTAAAGAAGAATCTTCGAATTTGCGTGGATTGTCAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33953.p1 GENE.S_Transcript_33953~~S_Transcript_33953.p1 ORF type:3prime_partial len:914 (+),score=164.07,PPR_2|PF13041.2|2.6e+03,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|4.2e-10,PPR_2|PF13041.2|42,PPR_2|PF13041.2|3.9e-08,PPR_2|PF13041.2|19,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|77,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|0.0084,PPR_2|PF13041.2|0.053,PPR_2|PF13041.2|2.4e+03,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|0.016,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|4.3e+02,PPR|PF01535.16|12,PPR|PF01535.16|0.00026,PPR|PF01535.16|2.7,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.034,PPR|PF01535.16|3.1e-06,PPR|PF01535.16|4.3e+03,PPR|PF01535.16|0.32,PPR|PF01535.16|3.2e-08,PPR|PF01535.16|0.044,PPR|PF01535.16|0.00097,PPR|PF01535.16|1.4,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.08,PPR_1|PF12854.3|3.1e+03,PPR_1|PF12854.3|70,PPR_1|PF12854.3|0.05,PPR_1|PF12854.3|4.9e+03,PPR_1|PF12854.3|8.1,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.036,PPR_1|PF12854.3|0.72,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.0034,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|4.5e-06,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|14,PPR_3|PF13812.2|6.2e+02,PPR_3|PF13812.2|0.0061,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|1.1e+02,DYW_deaminase|PF14432.2|1.5e-29,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|4.3e+02,TPR_14|PF13428.2|1.9e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.4e+03,TPR_14|PF13428.2|7.2e+02,TPR_14|PF13428.2|2.9e+02,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|47,TPR_14|PF13428.2|1.6e+04 S_Transcript_33953:86-2824(+)
MNFHRLISLQTPPAQPLYRPFKLCAVSLLPNFIFYPKHFQTLPSFQQQYQTDSFISLPVQKGNPFSTFSAFPLSFFSDHLSRCCETKSLGPGLQVHAQLTKSGLLIDAGFRNHLINLYSKCRVFGYARKLLDENPEPDLVSWSALISGYAQNGLGKEALSAFQEMHFLGIKCNEFGLSSVLKACSVKEDLRSGRQIHGVVLVTGFGADVFVSNTLVVVYAKCGEFEDSRRLFDEIMERSVVSWNALFSCYVQINHFEEAISLFDEMVSTSMKPNEFSLSSMLNACAGRGDSNLGRKIHGYFIKLGYEADQFSANALVDMYAKVGALKDAILAFENIQEPDLVSWNAIIAGSVLHEDHDLALELFSQMKNSGIYPNLYTLSSALKVCAGLAMKEQGRQLHSMLIKMDMNKDLFTAVGLLDMYCKCALMEDAETVFKTISEDLIAWNAMISGYSLNEENEQALKIFAEMYKEGVGFNKTTLSAVLKSITTLQDVKVCQQVHVLSVKSGLECDDYVVNSLVDSYGKSGCIKDAAKVFQQSRVGDLASFTSMISAFSQYGQGEEALKLFQNMQGIGLWPDPFACSALLNACANLSAYEQGKQVHVHVLKLGHMSDAFAGNSLVNMYAKCGCIDDATCSFSMLTEKGIVSWSAMIGGLAQHGHGKEALRFFDEMIKDGVHPNHVTLVSVLCTCSHAGLVDEAKEYFQSMERLYGIKPTQEHYACMIDILGRAGRLDEAMELVNTMPYEGNGAVWGALLGAARIHKNVELGQRAAEMLFTLEPEKSGTHVLLANLYASAGMWENVSEMRKLMKENKVKKEPGMSWVEVKNKVHAFIVGDKSHPRSKEIYAKLTELKDLMIKAGYVPVVEMDLHDVERSEKELLLLHHSEKLAVAFALLVTPPGAPIRVKKNLRICVDCH

Click here to download the sequence:
Link to NCBI Protein BLAST