Transcript Information: S_Transcript_340749.p1


Annotated TAIR IDAT4G18750.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)DOT4
Annotation TypeOrtholog
Chromosome Positionchr4:10304850-10307465 | Forward length=871
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24556402523811
Replicate 20.30536732951578
Replicate 30.42543797194004
Condition 2: 8 Hour
Replicate 11.131450928014
Replicate 20.79991615666843
Replicate 30.78674408691973
Condition 3: 24 Hour
Replicate 10.12597972024564
Replicate 20.2875454755938
Replicate 30.14545585008717


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_340749.p1 GENE.S_Transcript_340749~~S_Transcript_340749.p1 ORF type:complete len:867 (+),score=130.90,PPR|PF01535.16|12,PPR|PF01535.16|13,PPR|PF01535.16|0.00047,PPR|PF01535.16|94,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|9.4e-08,PPR|PF01535.16|0.0001,PPR|PF01535.16|5.8e-06,PPR|PF01535.16|6.1,PPR|PF01535.16|0.0011,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|15,PPR|PF01535.16|0.0059,PPR|PF01535.16|6.1,PPR|PF01535.16|0.083,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|8.7e+03,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|4.8e+02,PPR_2|PF13041.2|4.4e-09,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.00079,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|0.0044,PPR_2|PF13041.2|7.2e-09,PPR_2|PF13041.2|3.8e+02,PPR_2|PF13041.2|3.6e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.1e+02,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|21,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|0.0034,PPR_1|PF12854.3|0.00052,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|69,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|0.51,PPR_1|PF12854.3|65,PPR_1|PF12854.3|0.19,PPR_3|PF13812.2|6.6e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|4.1e+03,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.0083,PPR_3|PF13812.2|89,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|37,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.1e+02,DYW_deaminase|PF14432.2|4.2e-29,RPN7|PF10602.5|19,RPN7|PF10602.5|1.5e+03,RPN7|PF10602.5|4.9,RPN7|PF10602.5|2.4,RPN7|PF10602.5|18,RPN7|PF10602.5|7.4e+03,RPN7|PF10602.5|3.5e+02 S_Transcript_340749:112-2712(+)
ATGACAACAACCACCAATAGATTATGGGTTTGTTTACCCCATCAAATCCACCGGCAAAATAGTCTCAACCATCTCAATAATGCCTTCAAATTCTTCAAACCCACTTCAAAAATCAACCTAAAGTCATCACATTTTCGTGCTTTAGCAATGTTAAACAAAACCATGCCTCCCAAAATTGAGAATTGCAATAAGAAAATTAGACATTATTGTGAAGTGGGTAACCTTAAAGAAGCTGTAGATGTGCTTTGTAGGTCCCCGAAATCGGAACTTGAGTTGGGTACTTATTGTTTAGTCCTTCAGCTTTGTGCTGAGCATAAGTCATTACTTTTTGGTCGTAAAGTTCATTCAGTCATTTCGTCGAACATTTGGCAGGCTGACAGTGTGTTAGGTGCAAAGTTAGTGTTCATGTATGTGAATTGTGGAGATTTAGAAGAGGGGAGAAAGATCTTTGATCAGATTTCCAATGAAAAGGTTTATTTGTGGAACATTTTGATAAATGAGTATTCAAAAGTTGGTGATTTTTGGGAGGGAGTATATTTGTATTACAAAATGAAGGAGTTCGATGTCAAGCCTGATTCATATACGTTTTCCTGCGTGTTAAAGTGCTTTTCAGGGTTAAGGTTCTTGGAAGAAGGTGAAAAGGTTCATGGGTTGTTGTTAAAATTGCATCTTGGCATTAATACGACAGTTGTGAACTCCTTAATTAGCCTCTATTACAAGTGTGGTAGGGTTGAGAGTGCACAGAAGCTGTTTGATGAAATGCTTGACAGAGATGTTATATCTTGGAATTCTATGATAAGTGGGTATGCATTCAATGGGTTGCCTGTTAAAGGACTTGAGGTCTTCAAGCAAATGCTTTGTGAGGGTGTTGTGTTCGATCTCACAACTATGATTTGTGTTCTTGGAGCTTGTGCAGATATTGGTATCCTCGGCCTTGGTAAAAAGCTTCACACGTTTGCGATAAAAGCTGGTTTTGTTGGGGATGTAACCTGTGACAATACATTACTTGATATGTATTCAAAATGTGGAGATTTAGATAGTGCAATTCAAGTTTTTGAAAAGATGGATGATAGAAGTGTGGTGTCATGGACTTCGATGATAGCTTCATATGCTGGAGAAGGTCTATCTGCTGCTGCATTGAGATTATTTCGTGAAATGAGAGACAGTGGTGTGATACCTGACACTTATATTGTAACCAGTGTCTTGAATGCTTGTGCATCGAGTGGCTTGCTGGATAATGGCAAGGAGGTCCATGATTATGTTAGAAAGAGCCACATGAGCTCCGACTTATCAGTCTGCAATGCACTTATGGACATGTATGTGAAGTGTGGAAGCATGGACGATGCTCAATTGGTTTTCAGTCAGATGTCAGCCAGGGATATTGTCTCTTGGAACACCGCGATTGGTGGTTACTCAAAAAATGGTCTTCCAAATGAAGCACTAAATTTATTTCTAGATATGCAGCATGACTCAGTACCTGATTGTGTTACAATGTCCTGCATATTGCCTGCTTGTGCCAGCCTAGCAGCTCTGGAGAGAGGCAAAGAAATTCATGCTCATGTGTTGAGGAACGGACACTTTACCGATTTGTATGTTGCTAATGCACTCGTTGACATGTATGTGAAGTGTGGGGCTCTCATACTAGCAAGATCGGTATTTGTTACGGTTCTTAGCAAGGACTTGATCTCATGGACAATAATGACTGCTGGGTATTGCTTGCATGGACTTGGAAATGAAGCTACTAATAGCTTCAATGTAATGAGACATGAAGGTATTGAACCTGATGAGAACTCTTTTGCTGCTATCCTACTTGGCTGCAGTCACTCGGGATTGCTTGATGAGGGAAGGAAATTTTATAGCATAATGAAGAATGATTGCAAAATCGAACCCAAGTTGGAGCACTATACTTGCATAGTTCAACTCCTTGCTAATGCAGGAAAATTAAGAGAAGCGTATAAATTCATCGAGAAGATGCCACTGAAACCAGATGCTGAAGTCTGGGGCGCTTTGCTTCAAGGTTGCAGACTCCATCATGATGTCAAACTGGCCGAGAAAGTGGCGGAACACATTTTTGAGCTGGAGCCATACAACAAGACGTACTCTATGGTTTTAGAAAATATGTACTCTGAGGCCAAAATATGGGAGAAGGTGAAATGGTTAAAGAGCAGGATCGGCCATCTTGGGAAGAAAAAGAATCAGGTTTGCAGCTGGATTGAAGTCAATGGGAAAGTTCAAATATTTTTTGCAGGGAAAACTAATGCACACCCAGAGTACAAAAAGATAGAGACACTTTTAAAGAAGCTAAGAGATAGGATGAAAGAAAACAATTACTCTCAAAAGCCAAGGTATGCTATGTTAGATCCCAATGGAATGGAGAATGAAGTGGCTCTTTGTGGCCACAGTGAGATGTCAGCCATCGCCTTTGGGATCTTAAGTTTGGCGCCTAGGAAGACCATTCGCGTCACAAAGAACTCGAGAGTATGCCATGAGTGTCATGAGATGGCAAAGTTCATGTCCAAAAATTTTCGTAGGGAAATCATCTTGAGAGATTCTCATCGCTTTCACCATTTCAAGGACACTATCTGTTCTTGCAGAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_340749.p1 GENE.S_Transcript_340749~~S_Transcript_340749.p1 ORF type:complete len:867 (+),score=130.90,PPR|PF01535.16|12,PPR|PF01535.16|13,PPR|PF01535.16|0.00047,PPR|PF01535.16|94,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|9.4e-08,PPR|PF01535.16|0.0001,PPR|PF01535.16|5.8e-06,PPR|PF01535.16|6.1,PPR|PF01535.16|0.0011,PPR|PF01535.16|8.6e-07,PPR|PF01535.16|15,PPR|PF01535.16|0.0059,PPR|PF01535.16|6.1,PPR|PF01535.16|0.083,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|8.7e+03,PPR_2|PF13041.2|3.9,PPR_2|PF13041.2|4.8e+02,PPR_2|PF13041.2|4.4e-09,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.00079,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|0.0044,PPR_2|PF13041.2|7.2e-09,PPR_2|PF13041.2|3.8e+02,PPR_2|PF13041.2|3.6e-05,PPR_2|PF13041.2|25,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.1e+02,PPR_1|PF12854.3|3.9,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|21,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|0.0034,PPR_1|PF12854.3|0.00052,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|69,PPR_1|PF12854.3|0.7,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|0.51,PPR_1|PF12854.3|65,PPR_1|PF12854.3|0.19,PPR_3|PF13812.2|6.6e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.8,PPR_3|PF13812.2|4.1e+03,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.0083,PPR_3|PF13812.2|89,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|37,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.1e+02,DYW_deaminase|PF14432.2|4.2e-29,RPN7|PF10602.5|19,RPN7|PF10602.5|1.5e+03,RPN7|PF10602.5|4.9,RPN7|PF10602.5|2.4,RPN7|PF10602.5|18,RPN7|PF10602.5|7.4e+03,RPN7|PF10602.5|3.5e+02 S_Transcript_340749:112-2712(+)
MTTTTNRLWVCLPHQIHRQNSLNHLNNAFKFFKPTSKINLKSSHFRALAMLNKTMPPKIENCNKKIRHYCEVGNLKEAVDVLCRSPKSELELGTYCLVLQLCAEHKSLLFGRKVHSVISSNIWQADSVLGAKLVFMYVNCGDLEEGRKIFDQISNEKVYLWNILINEYSKVGDFWEGVYLYYKMKEFDVKPDSYTFSCVLKCFSGLRFLEEGEKVHGLLLKLHLGINTTVVNSLISLYYKCGRVESAQKLFDEMLDRDVISWNSMISGYAFNGLPVKGLEVFKQMLCEGVVFDLTTMICVLGACADIGILGLGKKLHTFAIKAGFVGDVTCDNTLLDMYSKCGDLDSAIQVFEKMDDRSVVSWTSMIASYAGEGLSAAALRLFREMRDSGVIPDTYIVTSVLNACASSGLLDNGKEVHDYVRKSHMSSDLSVCNALMDMYVKCGSMDDAQLVFSQMSARDIVSWNTAIGGYSKNGLPNEALNLFLDMQHDSVPDCVTMSCILPACASLAALERGKEIHAHVLRNGHFTDLYVANALVDMYVKCGALILARSVFVTVLSKDLISWTIMTAGYCLHGLGNEATNSFNVMRHEGIEPDENSFAAILLGCSHSGLLDEGRKFYSIMKNDCKIEPKLEHYTCIVQLLANAGKLREAYKFIEKMPLKPDAEVWGALLQGCRLHHDVKLAEKVAEHIFELEPYNKTYSMVLENMYSEAKIWEKVKWLKSRIGHLGKKKNQVCSWIEVNGKVQIFFAGKTNAHPEYKKIETLLKKLRDRMKENNYSQKPRYAMLDPNGMENEVALCGHSEMSAIAFGILSLAPRKTIRVTKNSRVCHECHEMAKFMSKNFRREIILRDSHRFHHFKDTICSCRG*

Click here to download the sequence:
Link to NCBI Protein BLAST