Transcript Information: S_Transcript_341473.p1


Annotated TAIR IDAT4G04480.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:2229649-2230845 | Forward length=398
E-Value2.3E-114
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3024204685816
Replicate 20.35099892477865
Replicate 30.75447556705639
Condition 2: 8 Hour
Replicate 10.33926757322712
Replicate 20.7626766581725
Replicate 30.33911575735198
Condition 3: 24 Hour
Replicate 10.14894238743587
Replicate 20.36056063871462
Replicate 30.45858262554757


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_341473.p1 GENE.S_Transcript_341473~~S_Transcript_341473.p1 ORF type:5prime_partial len:440 (+),score=96.94,Chloroplast_duf|PF14476.2|1.5e-138 S_Transcript_341473:2-1321(+)
AAATATCTTCAACCAACTTCCACCATTCTCACCAACACCAAGCTGAGAACTTTTTTACAAATACATAAAAATTGCATAATTATGGCTTCCTTACAAGCTTTATTACCAGCTAGCACCCATAAATCCTTGACAAATCTTGTATCCCCTTCAAAGAAATTACAAATTTCGGGCGCAATTCGTGTCCCAAGACTCCCAACAAAACAGGCTCAGAAACAACAGCTTGTGTTTATTGAGCTTGATAAGAATGATTCAATTCAAACATCAATGACAACCAAGGATAATGCGAGACTGAAGTTATCAACAATACTGGAGTTTGTAAATGATAGAATAGAGATGCACCAGAACATAGGGGAGCAACGGCAGAATTGGAACTCCTTGTTGCTGAACTCCCTCAACATGATCTCTCTTACGGCCACCGCCATGGCTGGCATTGCAGGAGCTCTTGAAACACCTGCTTTGCCTTTGAAGATGTCTTCCTTCTTGCTCTTCTCCGCGGCTGCAGGGATTCTTATGATAATGAACAAGATTCAGCCTTCTCAGCTTGTGGAGGAGCAAAGGTGCGCAGTTAGGCTGTTGAAGAAGCTCAAGAACAGGATTCAGACCACATTGGCTCTTAATACTACTCTGACTGAAAAAGAAATTGAGGGTGTAATAGACAATCTTTTAGCCATCGACAGGGCGTATCCTCTGCCTCTGTTGGGAGCTATGCTCGAGAAATTCCCCGAGACCTTCAAGCCCGCCGTCTGGTGGGGGCCACAGAAGTCGAAGAAATCCACATCATCATCACCAAGAGGGCTCAAGTCATCAATGCAATATGTCAATGGAGAGAAGGTGAATGGGTGGAGTGAAGGATTGGAGGAAGATATGAAGGAAATTGTGGGAGTCATAAGAAGTAAGGACATGGAAGATTATGTTAGATTAGGGAACAAGGCATTGGGGTTGAACAAGACACTGGCTGTTTCAGGCCCAATATTGATGGGCCTAGCAGCCGTGGGGTCCGCTTTCGTGGGCCACGGTGGTGGGGTGGTAGCGGCGGTGGTGGGTTCATTGGCTACCATTGTGAACACAATAGAGCATGGTGGACAAGTGGGGATGGTGTTTGAGATGTATAGGAATTGTGGTGGGTTTTTCAACCTCTTGCAAGAGACAGTTGAGTCTAATTTAGAAGAGGAAGACTTGGAGAAGAGAGAAAATGGGGAGATATTTGAGATGAAGATGGCTTTGCATTTGGGGAGGAGCTTGTCTGAGCTTAGAGATTTGGCAGGCAAATCAAGGAGAAATGGAGGGCCTGTTAATGAATTTGCAAACAAGCTCTTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_341473.p1 GENE.S_Transcript_341473~~S_Transcript_341473.p1 ORF type:5prime_partial len:440 (+),score=96.94,Chloroplast_duf|PF14476.2|1.5e-138 S_Transcript_341473:2-1321(+)
KYLQPTSTILTNTKLRTFLQIHKNCIIMASLQALLPASTHKSLTNLVSPSKKLQISGAIRVPRLPTKQAQKQQLVFIELDKNDSIQTSMTTKDNARLKLSTILEFVNDRIEMHQNIGEQRQNWNSLLLNSLNMISLTATAMAGIAGALETPALPLKMSSFLLFSAAAGILMIMNKIQPSQLVEEQRCAVRLLKKLKNRIQTTLALNTTLTEKEIEGVIDNLLAIDRAYPLPLLGAMLEKFPETFKPAVWWGPQKSKKSTSSSPRGLKSSMQYVNGEKVNGWSEGLEEDMKEIVGVIRSKDMEDYVRLGNKALGLNKTLAVSGPILMGLAAVGSAFVGHGGGVVAAVVGSLATIVNTIEHGGQVGMVFEMYRNCGGFFNLLQETVESNLEEEDLEKRENGEIFEMKMALHLGRSLSELRDLAGKSRRNGGPVNEFANKLF*

Click here to download the sequence:
Link to NCBI Protein BLAST