Transcript Information: S_Transcript_341616.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.051978518037462
Replicate 20
Replicate 30.18010484456641
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.041632514853479
Condition 3: 24 Hour
Replicate 10.085331576135134
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_341616.p1 GENE.S_Transcript_341616~~S_Transcript_341616.p1 ORF type:complete len:512 (-),score=82.62,UBN2_3|PF14244.2|2.6e-43,UBN2_3|PF14244.2|6.8e+03,Retrotrans_gag|PF03732.13|2.1e-05,Retrotrans_gag|PF03732.13|1.6e+03 S_Transcript_341616:582-2117(-)
ATGTCTACTGCTACTATTGATCCAGCACATCCAATGTATCTTCACCCAAGTGACAGTCCTGGTATGGTTCTCGTATCAAAGGTTTTTGATGGTTCTGCTTTTAGTTCTTGGAAGAAGTCTATCTCAATTGCAATTTCTGCTAAAAATAAGTCTGGTTTTATTGATGGTTCATGTTCTTGCCCTGATCTTGATGATCCTCTATATAAAACATGGATTCGATGTGATAATATGGTGACTTCTTGGCTGTTAAATGCACTCTCTAAAAACATTGCTGAATCTGTATTGTACTGTAATTCTGCACATGCTATTTGGAAAGACTTATGTGAGAGATATGGTCAAACCAATGGTGCTCAACTTTTTCAAACTCAGAAAGATGTATGCAACATGAATCAAGGGAGCAATAATATTTCTACATACTTTATGCATGCCAAGAGATTATGGGATGAACACAATGCTGTACATGTACTACCTCCTTGCACTTGTGGTTTAGCTGCTGAATGGCAAAGATATATGGACAGGTTAAAGCTAATGCAATTTTTGATGGGTTTAAATGAGGATTATATTCCTACAAGGGGAAATATCCTTATTCAAGTTCCTTTACCAAATTTAAATCAAGCATACTCTATGCTCTTGCAAGATGAAGCTCAGAAAGAGATTCATGCTAGCACTAAATTCAGTACAGACTCAGCTTCTTTTCATGTCTCTTCTAATAGATTCTCTCAGAGACCTCTACAGCATGTTGATTCCAAGAATAAACAAACGTTTGATCCCAAGAGAGCAAATTTGTTTTGTAACTACTGCAAGAAATCTGGTCACACAATAAAACAGTGTTACAAATTGAATGGATATCCATCTAATTTCAAGTTCACTAATCCTAGAGAAAGGAAAATTGCTGCACATGTTGAAGGTTTTTCTGAGTTGGGGGATACTTCTACTTTTGATACTCAATCTGCTGTATGTACATCATCTCAATCTCCTGTATTGACTAAAGAACAAACCATGCAACTTCTGGCTCTGCTGAACAATCAAACTGATGTTTCTTCTTCTGGTTCTGTGAATACAGCTACTATCAATACACCAAATTTTTCAGGTGATGTTTCTTCTCTCTATCCTCATGATGTTTCTTGTTTTTGTAATCTCTGCAAAGTTGTTGCTAAATCATGGATCATTGACACTGGGGCCAGTGATCACATGTGTTGTGATCAATACATTTTTAAACACATTTCTCCTTTATCTTCCCCTTACAATGTCTCTTTACCTAATGGTTCTTCAATTTCAGTGACACATGCTGGTACAGTTTCCTTAATGCCTGAATTCGTTTTACATGATGTCTTCTATATCCCTTTATTCCAATGTAACCTTCTTTCCATACCCAAACTAACTACACAAATTTCTTGCTCAATTTCTTTCTCATCCTCCCTCTGTGTGCTGCAGGCCCCTTCAATGAAGCGGCCCTTGGTAAGCAGCAGGGGGGTCTATATCTCTTACATCCTACTGAAGCATCTACTTCTTCCACCAGCCTTACATCTTCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_341616.p1 GENE.S_Transcript_341616~~S_Transcript_341616.p1 ORF type:complete len:512 (-),score=82.62,UBN2_3|PF14244.2|2.6e-43,UBN2_3|PF14244.2|6.8e+03,Retrotrans_gag|PF03732.13|2.1e-05,Retrotrans_gag|PF03732.13|1.6e+03 S_Transcript_341616:582-2117(-)
MSTATIDPAHPMYLHPSDSPGMVLVSKVFDGSAFSSWKKSISIAISAKNKSGFIDGSCSCPDLDDPLYKTWIRCDNMVTSWLLNALSKNIAESVLYCNSAHAIWKDLCERYGQTNGAQLFQTQKDVCNMNQGSNNISTYFMHAKRLWDEHNAVHVLPPCTCGLAAEWQRYMDRLKLMQFLMGLNEDYIPTRGNILIQVPLPNLNQAYSMLLQDEAQKEIHASTKFSTDSASFHVSSNRFSQRPLQHVDSKNKQTFDPKRANLFCNYCKKSGHTIKQCYKLNGYPSNFKFTNPRERKIAAHVEGFSELGDTSTFDTQSAVCTSSQSPVLTKEQTMQLLALLNNQTDVSSSGSVNTATINTPNFSGDVSSLYPHDVSCFCNLCKVVAKSWIIDTGASDHMCCDQYIFKHISPLSSPYNVSLPNGSSISVTHAGTVSLMPEFVLHDVFYIPLFQCNLLSIPKLTTQISCSISFSSSLCVLQAPSMKRPLVSSRGVYISYILLKHLLLPPALHLH*

Click here to download the sequence:
Link to NCBI Protein BLAST