Transcript Information: S_Transcript_34460.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value6.2E-169
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7376186373486
Replicate 25.3830173834486
Replicate 35.0067908955479
Condition 2: 8 Hour
Replicate 17.6214453367073
Replicate 25.7659403710636
Replicate 34.7612718018
Condition 3: 24 Hour
Replicate 12.8525964695621
Replicate 22.8816530182985
Replicate 35.8071373716247


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_34460.p1 GENE.S_Transcript_34460~~S_Transcript_34460.p1 ORF type:complete len:291 (+),score=68.16,AAA|PF00004.25|4.3e-31,MIT|PF04212.14|2.1e-21,MIT|PF04212.14|5.1e+03,MIT|PF04212.14|1.4e+04,AAA_16|PF13191.2|1.9e+03,AAA_16|PF13191.2|5.5e-05 S_Transcript_34460:300-1172(+)
ATGTACAGTAATTTCAAAGAACAGGCGATTGAGTACGTAAAACAAGCTGTACTAGAAGACAATGCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGACTCATCTTAAGTACGAGAAGAACCCCAAGATTCGCGAAGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCTGAGGAGATTCGCGCTGTTATTGATGAAGGCGGCGGCTCTGGTCCGGCATCCAATGGTGGTGATGCTGCTGTCGCTGCTCGGCCGAAGGGGAAACCGAAGGATGGGAAGGATGGTGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTGGATTGAATTCTGCTATTATCAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCGGGTTTGGAGAGTGCTAAACAGGCCTTGCAAGAGGCTGTTATCTTGCCTGTGAAGTTTCCTCAGTTCTTCACTGGTAAGAGACGACCATGGAGAGCATTTCTTTTGTATGGACCACCAGGAACAGGAAAGTCATATTTATCCAGGGCTGTTGCAAAAGAAGCAGATTCCACATTCTTTAGTGTATCCTGTTCAGCCTTGGTCTCTAAGTGGATGGGTGAAAGTGAAAAATTAGTCTCCAATCTTTTCCAAATGGCTCGTGAAAGTTCCCCTTCAATTATTTTTATTGATGAAATAGATTCATTATGTGGTCAGCGAGGAGAAGGAAATGAAAGTGAAGCTTCTAGACGTATCAAAACAGAGCTCCTAGTGCAGATGCAGGTGAGGTTCCTCAGGGCTTTTTTTGAGGGGGCGGGGATGGTTGCCTTTTTGAACCATGGGAAGAGTGCAGGAGCAACGCGTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_34460.p1 GENE.S_Transcript_34460~~S_Transcript_34460.p1 ORF type:complete len:291 (+),score=68.16,AAA|PF00004.25|4.3e-31,MIT|PF04212.14|2.1e-21,MIT|PF04212.14|5.1e+03,MIT|PF04212.14|1.4e+04,AAA_16|PF13191.2|1.9e+03,AAA_16|PF13191.2|5.5e-05 S_Transcript_34460:300-1172(+)
MYSNFKEQAIEYVKQAVLEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVIDEGGGSGPASNGGDAAVAARPKGKPKDGKDGGEGEDAEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLSRAVAKEADSTFFSVSCSALVSKWMGESEKLVSNLFQMARESSPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQVRFLRAFFEGAGMVAFLNHGKSAGATRE*

Click here to download the sequence:
Link to NCBI Protein BLAST