Transcript Information: S_Transcript_34460.p2


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value1.6E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9713545068405
Replicate 21.1781101220032
Replicate 31.2533898309243
Condition 2: 8 Hour
Replicate 15.6936721720501
Replicate 23.8010422446137
Replicate 31.7590748023528
Condition 3: 24 Hour
Replicate 11.696689979852
Replicate 21.100185027978
Replicate 30.6121855438135


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_34460.p2 GENE.S_Transcript_34460~~S_Transcript_34460.p2 ORF type:complete len:206 (+),score=42.52,Vps4_C|PF09336.6|5.9e-18 S_Transcript_34460:1247-1864(+)
ATGAAAGAAAATTGTTCTTATGTTTTATGTCTCCAGGGTGTTGGACACTATGATGAAAAAGTTCTTGTTCTTGCTGCAACAAACACTCCGTACGCTCTAGATCAGGCTATTCGACGACGTTTTGATAAGCGTATTTATATCCCTCTACCTGATCTGAAAGCTCGGCATCATATGTTCAAGGTTCATATTGGGGATACACCACACAACTTGACTGAAAGTGACTTTGAATTCTTAGCCCGTAAAACAGAGGGCTTCTCTGGTTCAGAAATGTCTTTTTGTGTCAAGGATGTACTTTTTGAACCTGTTCGGAAAACCCAAGATGCCTTGTTCTTCTATAAGACAAAAGATGATGTGTGGGTGCCCTGTGGACCAAGACAGCCAGGTGCTGTGCAAATTACCATGCAGGAGCTTGCAGCAAAGGGATTTGCTGCAAAGATTGTTCCACCCCCAATAACAAAAACTGATTTTGAGAAAGTAGTATCAAGGCAGAGGCCAACTGTGAGCAAAGCAGACCTTGGTGTATACGAGAGATACAGGAGTTTGGAGAAAAAGGCTGATGATTATTCAGATGGAAGACTGTCGTGTCAGGTTGCAACCAAACTTTGTAATTTAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_34460.p2 GENE.S_Transcript_34460~~S_Transcript_34460.p2 ORF type:complete len:206 (+),score=42.52,Vps4_C|PF09336.6|5.9e-18 S_Transcript_34460:1247-1864(+)
MKENCSYVLCLQGVGHYDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARHHMFKVHIGDTPHNLTESDFEFLARKTEGFSGSEMSFCVKDVLFEPVRKTQDALFFYKTKDDVWVPCGPRQPGAVQITMQELAAKGFAAKIVPPPITKTDFEKVVSRQRPTVSKADLGVYERYRSLEKKADDYSDGRLSCQVATKLCNLI*

Click here to download the sequence:
Link to NCBI Protein BLAST