Transcript Information: S_Transcript_34463.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value2.1E-277
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.22459285829
Replicate 215.192359476008
Replicate 312.618714162463
Condition 2: 8 Hour
Replicate 112.720408259343
Replicate 214.620199330348
Replicate 316.828300740775
Condition 3: 24 Hour
Replicate 116.766906187956
Replicate 216.053533199913
Replicate 315.265974245202


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_34463.p1 GENE.S_Transcript_34463~~S_Transcript_34463.p1 ORF type:complete len:456 (+),score=106.21,AAA|PF00004.25|2.6e-43,MIT|PF04212.14|4.2e-21,MIT|PF04212.14|8.4e+03,Vps4_C|PF09336.6|2.2e-17,AAA_5|PF07728.10|0.0001 S_Transcript_34463:300-1667(+)
ATGTACAGTAATTTCAAAGAACAGGCGATTGAGTACGTAAAACAAGCTGTACTAGAAGACAATGCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGACTCATCTTAAGTACGAGAAGAACCCCAAGATTCGCGAAGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCTGAGGAGATTCGCGCTGTTATTGATGAAGGCGGCGGCTCTGGTCCGGCATCCAATGGTGGTGATGCTGCTGTCGCTGCTCGGCCGAAGGGGAAACCGAAGGATGGGAAGGATGGTGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTGGATTGAATTCTGCTATTATCAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCGGGTTTGGAGAGTGCTAAACAGGCCTTGCAAGAGGCTGTTATCTTGCCTGTGAAGTTTCCTCAGTTCTTCACTGGTAAGAGACGACCATGGAGAGCATTTCTTTTGTATGGACCACCAGGAACAGGAAAGTCATATTTATCCAGGGCTGTTGCAAAAGAAGCAGATTCCACATTCTTTAGTGTATCCTGTTCAGCCTTGGTCTCTAAGTGGATGGGTGAAAGTGAAAAATTAGTCTCCAATCTTTTCCAAATGGCTCGTGAAAGTTCCCCTTCAATTATTTTTATTGATGAAATAGATTCATTATGTGGTCAGCGAGGAGAAGGAAATGAAAGTGAAGCTTCTAGACGTATCAAAACAGAGCTCCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAAAAAGTTCTTGTTCTTGCTGCAACAAACACTCCGTACGCTCTAGATCAGGCTATTCGACGACGTTTTGATAAGCGTATTTATATCCCTCTACCTGATCTGAAAGCTCGGCATCATATGTTCAAGGTTCATATTGGGGATACACCACACAACTTGACTGAAAGTGACTTTGAATTCTTAGCCCGTAAAACAGAGGGCTTCTCTGGTTCAGAAATGTCTTTTTGTGTCAAGGATGTACTTTTTGAACCTGTTCGGAAAACCCAAGATGCCTTGTTCTTCTATAAGACAAAAGATGATGTGTGGGTGCCCTGTGGACCAAGACAGCCAGGTGCTGTGCAAATTACCATGCAGGAGCTTGCAGCAAAGGGATTTGCTGCAAAGATTGTTCCACCCCCAATAACAAAAACTGATTTTGAGAAAGTAGTATCAAGGCAGAGGCCAACTGTGAGCAAAGCAGACCTTGGTGTATACGAGAGATACAGGAGTTTGGAGAAAAAGGCTGATGATTATTCAGATGGAAGACTGTCGTGTCAGGTTGCAACCAAACTTTGTAATTTAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_34463.p1 GENE.S_Transcript_34463~~S_Transcript_34463.p1 ORF type:complete len:456 (+),score=106.21,AAA|PF00004.25|2.6e-43,MIT|PF04212.14|4.2e-21,MIT|PF04212.14|8.4e+03,Vps4_C|PF09336.6|2.2e-17,AAA_5|PF07728.10|0.0001 S_Transcript_34463:300-1667(+)
MYSNFKEQAIEYVKQAVLEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVIDEGGGSGPASNGGDAAVAARPKGKPKDGKDGGEGEDAEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLSRAVAKEADSTFFSVSCSALVSKWMGESEKLVSNLFQMARESSPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARHHMFKVHIGDTPHNLTESDFEFLARKTEGFSGSEMSFCVKDVLFEPVRKTQDALFFYKTKDDVWVPCGPRQPGAVQITMQELAAKGFAAKIVPPPITKTDFEKVVSRQRPTVSKADLGVYERYRSLEKKADDYSDGRLSCQVATKLCNLI*

Click here to download the sequence:
Link to NCBI Protein BLAST