Transcript Information: S_Transcript_345944.p2


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0170567902159
Replicate 21.248837144765
Replicate 31.0439284575623
Condition 2: 8 Hour
Replicate 15.4319390430433
Replicate 25.9095449237014
Replicate 32.6142077251392
Condition 3: 24 Hour
Replicate 11.2365028390902
Replicate 22.351904974904
Replicate 33.8071010422817


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_345944.p2 GENE.S_Transcript_345944~~S_Transcript_345944.p2 ORF type:5prime_partial len:106 (-),score=13.58 S_Transcript_345944:20-337(-)
GAGGATATAAACATTACGAGATTGAAGGGTGAGCTGAACGTTGAGCATGGAAAACATTGGTTACTCCCGGGTCCTGAGTCCAAGGAGATCTCAATCGATCTGGGAACGCTTTCGACAGTGTTGAATAGCAAGGGTATTAAAACATCTCTACGAAAAGCCACATGTGATGATGGGTCTAGCACCTCTATGTTAGATGTTGATGAACCTAGCAAGGCTGTGATAGAAGTGCACCCAAAAAGGATAGTGATAAGCACACATGACAAGCACTTGTCCTCCTGCATTTTTGAAGTTGTGGATAGCGTTCTTAGTGCCATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_345944.p2 GENE.S_Transcript_345944~~S_Transcript_345944.p2 ORF type:5prime_partial len:106 (-),score=13.58 S_Transcript_345944:20-337(-)
EDINITRLKGELNVEHGKHWLLPGPESKEISIDLGTLSTVLNSKGIKTSLRKATCDDGSSTSMLDVDEPSKAVIEVHPKRIVISTHDKHLSSCIFEVVDSVLSAM*

Click here to download the sequence:
Link to NCBI Protein BLAST