Transcript Information: S_Transcript_347250.p1


Annotated TAIR IDAT3G05340.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:1524071-1526047 | Reverse length=658
E-Value6E-263
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0111322657743
Replicate 20.20118045189223
Replicate 30.33634169149423
Condition 2: 8 Hour
Replicate 11.5232421655095
Replicate 21.7339882684287
Replicate 31.392980922514
Condition 3: 24 Hour
Replicate 10.23239237755951
Replicate 20.24110437847178
Replicate 30.34498237028274


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_347250.p1 GENE.S_Transcript_347250~~S_Transcript_347250.p1 ORF type:complete len:658 (+),score=122.17,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|8.5e-06,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|9.4e+03,PPR|PF01535.16|6.9e-05,PPR|PF01535.16|8.2e-05,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.025,PPR|PF01535.16|0.00037,PPR|PF01535.16|0.0015,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|0.0053,PPR|PF01535.16|18,PPR_2|PF13041.2|3.3e-05,PPR_2|PF13041.2|4.9e-09,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|0.0053,PPR_2|PF13041.2|3,PPR_2|PF13041.2|5.2e-10,PPR_2|PF13041.2|45,PPR_2|PF13041.2|7.7e+02,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|7.4e+03,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|8.2e+02,PPR_1|PF12854.3|81,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|2.3,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|93,PPR_3|PF13812.2|2.1e+02,DYW_deaminase|PF14432.2|2.7e-08 S_Transcript_347250:130-2103(+)
ATGAAACCCAGATGGATTTCTCACAAACTAACCACTCTGTATATTTCCCTTCATCATTCGATCAGAACTCTCACTACTTTACCAACCCAAACAATTCCAAGTCATGTTCATGTAAGCCGTCTTCTATCCCATTGTGGAAGAGAAGGAAACCTCCATTTGGGCTCATCCCTTCACGCTTCAATAATAAAAAACTACCATTACTATGACCCGACAAATTACAATGATCCCAGAACTGCCATTGTCGTTTGGAACTCCCTGCTTTCGATGTACGCAAAATGCCGGGTTTTTCAAGATGCCCTTAAAGTGTTCGATGAAATGCCTAAGAGAGATACAGTGTCTTGGAATTCTGTTGTTTCTGGGGTTTTGAGTGATGGGGATTTCGATATGGGGTTCAAGTATTTTAGGGAGATGGTTGAGTTGGGTATTGACCAGCTTGATCAAGCCACTTTCACTACTGTTTTATCAGCTTGTGATGGTTCGGGTTTTTCGAGGGTCAGTAGCATGATACATGGGCTGGTAGTTTCTAGTGGTTATGCTAGTGAGGTTACTGTAGGAAATGCTTTGATAACGTCTTATTTTAAATGCGGGCGTTCTGATTCTGCCAAGCGGTTTTTTGATGAAATGGCTGAGAAGAATGTTGTCACTTGGACTGCTGTTATCTCTGGTCTTGTTCAGAATGGGTTGTATGAGGATAGTCTAGGACTGCTTGCTAAGATGCATGATGGATTGATAGAACCTAATGCTTTGACATACTTGAGCTTGCTGTCGGCTTGTTCTGGTTTACAAGCTCTAAGAGAAGGGAGGCAGATTCATGGTTTCTTGTTGAAACTTGGGTTTCAGTCTGATTTTTGTATTGAGAGTGCACTAATGGACTTGTACTCGAAATGTGGAAGCATGGAAGATGCTTTGCAGATTTTTAATTCAGCAGAGAAACTTGATGGGGTTTCCATGACTGTTATACTTGTGGGTTTTGCTCAAAATGGGCTCGAAGAAGAGGCCATCCAAGTCTTTGTCAAAATGATGAAGTCGGGAATTAACATTGATCCAAACATGGTTTCCGCCATTCTTGGTGTTTTTGGTGCAGACACTTCTTTGGCTTTCGGTCAGCAAATTCACTCATTAGTTATCAAAAAAAGATTTGGTGCTAACCTGTATGTCAGCAACGGGCTTGTCAACATGTACGCTAAGTGTGGGAACTTGGAGGATTCGATCAAAGTCTTTTGCCGGATGCCTCAAAGGAACTCGGTCTCATGGAATTCTGTAATTGCAGCCTATGCGCGACATGGGGATGGACTAAAAGCTATTGAATTGTATGAACAAATGCTTTTGGGCGAGGTACAACCTACAGATGTTACATTCCTGTCATTGCTCCATGCTTGCAGCCACGTGGGACTAATTGACAAAGGCATGGAATTCTTCGAATCTATGGACAGTGTATATCGAATTAATCCAAGAATAGAACATTATGCTTGTGTTGTTGATATGCTAGGCAGAGCTGGGCTACTTAGTGAAGCTAAAAATTTTGTGGATCAATTACCTGTGAAACCTGGAATTCTGGTCTGGCAAGCATTGCTTGGTGCTTCTGCCATTCATGGTAATTCTGATTTGGGAAAATATGCTGCTGATCAGTTGGTTGAGTTAGAACCTGACAACCCAGCACCTTATGTACAGCTGGCTAATATCTATTCATCAGAGAGGAAATGGAAAGATAGAGCACGAACCATCAAGAGACTGAAGGAGACAGGATTGGCCAAAGAAACTGGTATAAGTTGGATTGAGATCGAGAAGAAGGTTCATAGTTTTGTTGTTTGTGACAGGATGCATCCACAAGCTGAGACTATTTATAGTGCCTTGTCAGGGATGTTTCTTCAGCTGGCAGATGAAGGATACAAGCCAGATAAGAGGTTCATCCTGCACTACTTGGAGCAGGATGAAGATGAGAATCAACTCGAAACAACTATTCCCTTGCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_347250.p1 GENE.S_Transcript_347250~~S_Transcript_347250.p1 ORF type:complete len:658 (+),score=122.17,PPR|PF01535.16|1.8e+03,PPR|PF01535.16|8.5e-06,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|9.4e+03,PPR|PF01535.16|6.9e-05,PPR|PF01535.16|8.2e-05,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.025,PPR|PF01535.16|0.00037,PPR|PF01535.16|0.0015,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|0.0053,PPR|PF01535.16|18,PPR_2|PF13041.2|3.3e-05,PPR_2|PF13041.2|4.9e-09,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|2.6,PPR_2|PF13041.2|0.0053,PPR_2|PF13041.2|3,PPR_2|PF13041.2|5.2e-10,PPR_2|PF13041.2|45,PPR_2|PF13041.2|7.7e+02,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|0.76,PPR_1|PF12854.3|7.4e+03,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|8.2e+02,PPR_1|PF12854.3|81,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|0.39,PPR_1|PF12854.3|0.0031,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|2.3,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|93,PPR_3|PF13812.2|2.1e+02,DYW_deaminase|PF14432.2|2.7e-08 S_Transcript_347250:130-2103(+)
MKPRWISHKLTTLYISLHHSIRTLTTLPTQTIPSHVHVSRLLSHCGREGNLHLGSSLHASIIKNYHYYDPTNYNDPRTAIVVWNSLLSMYAKCRVFQDALKVFDEMPKRDTVSWNSVVSGVLSDGDFDMGFKYFREMVELGIDQLDQATFTTVLSACDGSGFSRVSSMIHGLVVSSGYASEVTVGNALITSYFKCGRSDSAKRFFDEMAEKNVVTWTAVISGLVQNGLYEDSLGLLAKMHDGLIEPNALTYLSLLSACSGLQALREGRQIHGFLLKLGFQSDFCIESALMDLYSKCGSMEDALQIFNSAEKLDGVSMTVILVGFAQNGLEEEAIQVFVKMMKSGINIDPNMVSAILGVFGADTSLAFGQQIHSLVIKKRFGANLYVSNGLVNMYAKCGNLEDSIKVFCRMPQRNSVSWNSVIAAYARHGDGLKAIELYEQMLLGEVQPTDVTFLSLLHACSHVGLIDKGMEFFESMDSVYRINPRIEHYACVVDMLGRAGLLSEAKNFVDQLPVKPGILVWQALLGASAIHGNSDLGKYAADQLVELEPDNPAPYVQLANIYSSERKWKDRARTIKRLKETGLAKETGISWIEIEKKVHSFVVCDRMHPQAETIYSALSGMFLQLADEGYKPDKRFILHYLEQDEDENQLETTIPLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST