Transcript Information: S_Transcript_347545.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value1E-43
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42242859103461
Replicate 20.35020300884944
Replicate 30.29274184259683
Condition 2: 8 Hour
Replicate 10.28208188250176
Replicate 20.23673913904473
Replicate 30.50752018107098
Condition 3: 24 Hour
Replicate 10.40453487945545
Replicate 20.059957173482401
Replicate 30.06672498519872


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_347545.p1 GENE.S_Transcript_347545~~S_Transcript_347545.p1 ORF type:5prime_partial len:378 (+),score=24.89,zf-RING_2|PF13639.2|4.8e+03,zf-RING_2|PF13639.2|4.1e+02,zf-RING_2|PF13639.2|3.7e-12,zf-rbx1|PF12678.3|1e+04,zf-rbx1|PF12678.3|5.5e-09,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|7.6e-08,zf-RING_11|PF17123.1|1.4e+03,zf-RING_11|PF17123.1|1.3e+04,zf-RING_11|PF17123.1|8.1e-07,zf-RING_11|PF17123.1|1.6e+04,zf-C3HC4|PF00097.21|4.9e-06,zf-ANAPC11|PF12861.3|3.4e-05 S_Transcript_347545:2-1135(+)
CCAAACAAACAGGACATGAAAGGTTCCATCCAGCTAGTCATTATACTTGTAATTCCTATAACCTTCCTATGTATGTTATACATGAGCAATGGTGAGTCATACTACCCTTTAACCTGCAATGCTAGTTCTAGCTATTCCATTCATTCACCTTTGATCCAATTTCCATTTCACATAAAAACTCTACAGCCAATTTCCTGTGGTTTTCCAGGATTCAATGTGTATTGCGGCCAGAGCAACCAGACCTTCTTAGACATCACTCTTGGAGCAACCTTTGTTGTTCATTCGATATACTATAATGCTCGACAACTAAAACTTTCTGATCCTAATAAGTGCCTTCCTCGAAAGCTCGTGTCCCTTGATATGGCTAAGTTTAGTCCATTTCGAGTTAAAAACTTTTCTACATTTCGGCTCTATAATTGCTCTGGAAATTATGGCTATGACTATGACCTCTATGATCGAATTGATTGTCTTAGCCATTCAAATTATACTGTCTTGAGTGCTCCAGGTGGTGGTTTTATCCGTGATTCGAATTGTACACTAATGAAAGTTGTGTTCGCCCCAGGAAGCTATCACTTGAGCACTAAATTGAGCAGTATTGAGACTATTTCTCTTACCTGGGATGAGCTCTCGTGTGACTCTTGCAGTTATACTCCTGTGACTTTACCGCCCAAATTTTCTAGATTTGATGACAAAGGAGATGAATCAAGAAAGAGAAATGCATTGAGAATAGGACTGGGAATTGGATTGCCAACAGTTGTCATGTTGATTCTATGTTACTTTCACTGCAAGTGCAATAATCGGGAAGAAGAGCAGAGAAATCAAATACAAGCTTCAACCCAAAATCATGCAAATGTGGTAGCCCATGAAGAACAATGTGCAACTAATATCGGTCTTGATCAAATGACCATAAACTCATATCCAATGGTGGTCATTGACAATACTGGAAGTCTAATCAAATCAAATGATGACATGTGTCCTATATGCCTGTCTCACTATGCCCCTCTAGATACTTTGAAAATTCTTCCTGCTTGCCTTCATCGCTTCCATGCTGAGTGTATTAGTCAATGGCTCCTCTCCAACGCCACTTGTCCCATTTGTAGAATTTCTCCCCCTCTCTTTTCTTTTTCTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_347545.p1 GENE.S_Transcript_347545~~S_Transcript_347545.p1 ORF type:5prime_partial len:378 (+),score=24.89,zf-RING_2|PF13639.2|4.8e+03,zf-RING_2|PF13639.2|4.1e+02,zf-RING_2|PF13639.2|3.7e-12,zf-rbx1|PF12678.3|1e+04,zf-rbx1|PF12678.3|5.5e-09,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|7.6e-08,zf-RING_11|PF17123.1|1.4e+03,zf-RING_11|PF17123.1|1.3e+04,zf-RING_11|PF17123.1|8.1e-07,zf-RING_11|PF17123.1|1.6e+04,zf-C3HC4|PF00097.21|4.9e-06,zf-ANAPC11|PF12861.3|3.4e-05 S_Transcript_347545:2-1135(+)
PNKQDMKGSIQLVIILVIPITFLCMLYMSNGESYYPLTCNASSSYSIHSPLIQFPFHIKTLQPISCGFPGFNVYCGQSNQTFLDITLGATFVVHSIYYNARQLKLSDPNKCLPRKLVSLDMAKFSPFRVKNFSTFRLYNCSGNYGYDYDLYDRIDCLSHSNYTVLSAPGGGFIRDSNCTLMKVVFAPGSYHLSTKLSSIETISLTWDELSCDSCSYTPVTLPPKFSRFDDKGDESRKRNALRIGLGIGLPTVVMLILCYFHCKCNNREEEQRNQIQASTQNHANVVAHEEQCATNIGLDQMTINSYPMVVIDNTGSLIKSNDDMCPICLSHYAPLDTLKILPACLHRFHAECISQWLLSNATCPICRISPPLFSFSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST