Transcript Information: S_Transcript_3478.p1


Annotated TAIR IDAT5G54090.1
Annotated Gene NameDNA mismatch repair protein MutS, type 2
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21948283-21952550 | Reverse length=796
E-Value3E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6083119021957
Replicate 27.5452830088471
Replicate 38.3032231718375
Condition 2: 8 Hour
Replicate 110.893489426068
Replicate 210.265869938576
Replicate 311.995931552587
Condition 3: 24 Hour
Replicate 110.496892066909
Replicate 29.8111738425746
Replicate 36.7695530437974


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3478.p1 GENE.S_Transcript_3478~~S_Transcript_3478.p1 ORF type:internal len:231 (+),score=34.90 S_Transcript_3478:3-692(+)
TCCATTTTCCGACACTTTCTTCAGTTCTTCTTTCTTCAACCATCATCATCATCATCATCAACAACAACAATTATGCTAACATCAGCTGTTTTCCGCAACACAATCACCTCAATTTCGATCATTCCATCAAAAACCATCAACCCCCATTCAAAATCATCATCCAAAGCAAAGAGTCGATTCTCCACATTCCAATTCCGAATTCGCGCCACTCTCAAACCCCTAATACACCCCCAATCCCCAAACCAAACACTCGAATTCCACGACGACCATGATCCAGAAAAAAACCCCATACCTAGGGTTTTGCTAAACAGTCTTAGGGTTTTAGAGTGGGACAAGCTTTGCGACGTCGTTTCTTCTTTTGCCGGAACTTCCTTTGGCCGCCTTGCCTCCAAGGAACAATTATGGGCGATTGATCAGACTTATGAAGAGAGCTTGGAGCTACTAAGGGAGACTAATGCCGCTGTTGAAATTCATAAGTATAATAATTCCTTGATGGATTTCACCTCCATTGATGCCCTTCTGGTGAGGACTGGCATTGATCGAGCACGTAGAAGCTCACCAGTGAGCAGACCGGAAGCACTAGCTGTTGCAGAAATGCTGCAATTTGCAGAGACTTTGCAGCTTAACATTAAGTCAGCGATCAAGGACAATGCTGATTTGCTGGAGCGTTTTATGCCTCTAGCTGAGTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3478.p1 GENE.S_Transcript_3478~~S_Transcript_3478.p1 ORF type:internal len:231 (+),score=34.90 S_Transcript_3478:3-692(+)
SIFRHFLQFFFLQPSSSSSSTTTIMLTSAVFRNTITSISIIPSKTINPHSKSSSKAKSRFSTFQFRIRATLKPLIHPQSPNQTLEFHDDHDPEKNPIPRVLLNSLRVLEWDKLCDVVSSFAGTSFGRLASKEQLWAIDQTYEESLELLRETNAAVEIHKYNNSLMDFTSIDALLVRTGIDRARRSSPVSRPEALAVAEMLQFAETLQLNIKSAIKDNADLLERFMPLAEL

Click here to download the sequence:
Link to NCBI Protein BLAST