Transcript Information: S_Transcript_3479.p1


Annotated TAIR IDAT5G54090.1
Annotated Gene NameDNA mismatch repair protein MutS, type 2
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21948283-21952550 | Reverse length=796
E-Value1.5E-185
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.436992266359
Replicate 215.170447034589
Replicate 316.278381931641
Condition 2: 8 Hour
Replicate 121.607378949426
Replicate 222.223935590869
Replicate 320.399794650056
Condition 3: 24 Hour
Replicate 117.223156074402
Replicate 215.059259923457
Replicate 314.25775072157


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3479.p1 GENE.S_Transcript_3479~~S_Transcript_3479.p1 ORF type:complete len:605 (+),score=151.70,MutS_V|PF00488.17|5.7e-40 S_Transcript_3479:1254-3068(+)
ATGAGCACTCTAGTGGCAAATGAAACCAATGAACTGCCTTCCTTGGAAGCCCGTAATATTGATGGGAGATGGTGCATCAGATCAGGAACAGATCAACTTACTAGCTTCCAGGGGCTGCTGCTTTCCAGTGGATCTGGCATGGGAAACATAATAGAACCAATTTCAGCTGTTCCGTTAAATGATGAACTACTGGAAGCTAGGTCATCTGTAGAAGATGCTGAGGCTGAAGTTCTTTTGGATATAACAGAAAAGATGAAAATGGACCTTGCTAGCATAGAATTACTGTTGAAGAATATAGTTGAACTTGACGTTGTAAATGCCAGAGCAAGCTATGGTCTCTCAATGAGAGGAAACTGTCCTGATTTACTTCTGTTTGACAAGAAGAATATTCCCTTACACTCAGAAGGCTTCTCACCTGAGGTTAAACTCGCCAATTTTACCAAGAAGCGATGGATGTTGTGTTTGCCCAAGGCATACCATCCTCTGTTACTTCAGCAGTACCGGCATAATCTCCGGGAAGCCAAGAAGGATGTTGCTGTTGCCACTGCAGAACTCAGACGAAGAAAGCTGTATGGAGAAAACGTCAACCAGCAAGAAGCCAAACAAATAGATCTTCAGATGCTAGAAGAGAAGGTTGCCCAACTGGAAAATACACACCCGGTTCCAGTTGACTTACTTATTGATGAAAGTACAAGGGTTCTTCTTATAACTGGCCCTAACACAGGAGGCAAAACTATTTGTTTGAAATCAGTTGGACTTGCTGCTATCATGGCAAAAACAGGTCTTTATGTTTTATGTTCTGAACCAGCACGAATCCCATGGTTTGATTGTGTTTTTGCTGATATTGGTGATGAGCAGTCATTGTCTCAGTCTTTGTCAACCTTCTCTGGACACCTCAGGCAGATTAGTGATATACAAGCAAAGTCAACCAATCAATCACTGGTGCTTTTAGATGAAATTGGTGCAGGCACCAATCCCCTAGAGGGTGCAGCACTCGGGATGTCTGTGCTAGAATCTTTTGCTGAAGCTGATGCTTTATTAACCTTAGCCACAACACATCATGGTGAACTCAAAACCCTTAAATACAGCAATGAAGCCTTTGAGAACGCATGTGTGGAGTTTGATGAAGTCAACTTGAAGCCAACTTATAAGATTCTTTGGGGAGTTCCAGGTCGTTCAAATGCAATAAATATAGCAGAAAGGTTAGGATTTCCAAAATCAATTTTATGTAATGCTCGTCAACTGTATGGAGTTGCCAGTGCAGAGGTAGATGAGGTCATATATGAATTGGAAAAGTTCAAGCAAGATGTTGAAGAACATGTATATGAAGCACACAATCATCTGATGGTCTCAAGAGAACTTCATGAGAAGGTACTTAATGTCCAAAGAAAGCTTGCTGTGCATAGATCTGATCTTAGTTATACAAAGATGCAACAAATATCAGAGTATGCATCTAGGGCTCGTTCAACTCTTCACAGGAAGATGCAGCTATATCGTGCATCTGCATGCCAGATTCCCAAGCCCACAGGAACAGAACTGAGTGTGCAAGGAGAACCAGTTAACAGCCAGAAGCATGCAGTTGGTGATAATGCTTCCTCTTCAGAAAGTGCAATTGGTATTCCTGTCGAGGAGTCTGAGCAGATGTCATCAGGTGCAGAAAACAGAACTAGATTGCCTATGGTGGGCACTGTAGTTCAAATTCCTTCACTTAGGACCAAGGCAACAGTTCTTCAGGTGGAATCATCTAAAGAAGAGATTTTAGTTCAAGCTGGCAAGTTGAAGCTGAAGTTGAAAATATCTGATATTAAGATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3479.p1 GENE.S_Transcript_3479~~S_Transcript_3479.p1 ORF type:complete len:605 (+),score=151.70,MutS_V|PF00488.17|5.7e-40 S_Transcript_3479:1254-3068(+)
MSTLVANETNELPSLEARNIDGRWCIRSGTDQLTSFQGLLLSSGSGMGNIIEPISAVPLNDELLEARSSVEDAEAEVLLDITEKMKMDLASIELLLKNIVELDVVNARASYGLSMRGNCPDLLLFDKKNIPLHSEGFSPEVKLANFTKKRWMLCLPKAYHPLLLQQYRHNLREAKKDVAVATAELRRRKLYGENVNQQEAKQIDLQMLEEKVAQLENTHPVPVDLLIDESTRVLLITGPNTGGKTICLKSVGLAAIMAKTGLYVLCSEPARIPWFDCVFADIGDEQSLSQSLSTFSGHLRQISDIQAKSTNQSLVLLDEIGAGTNPLEGAALGMSVLESFAEADALLTLATTHHGELKTLKYSNEAFENACVEFDEVNLKPTYKILWGVPGRSNAINIAERLGFPKSILCNARQLYGVASAEVDEVIYELEKFKQDVEEHVYEAHNHLMVSRELHEKVLNVQRKLAVHRSDLSYTKMQQISEYASRARSTLHRKMQLYRASACQIPKPTGTELSVQGEPVNSQKHAVGDNASSSESAIGIPVEESEQMSSGAENRTRLPMVGTVVQIPSLRTKATVLQVESSKEEILVQAGKLKLKLKISDIKM*

Click here to download the sequence:
Link to NCBI Protein BLAST