Transcript Information: S_Transcript_3484.p1


Annotated TAIR IDAT5G54090.1
Annotated Gene NameDNA mismatch repair protein MutS, type 2
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21948283-21952550 | Reverse length=796
E-Value1E-123
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.2053135945336
Replicate 29.0338665235501
Replicate 311.944153711565
Condition 2: 8 Hour
Replicate 114.78514010568
Replicate 217.408436869738
Replicate 314.674205039645
Condition 3: 24 Hour
Replicate 111.902432440226
Replicate 213.420821537054
Replicate 312.67274009262


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3484.p1 GENE.S_Transcript_3484~~S_Transcript_3484.p1 ORF type:5prime_partial len:613 (+),score=117.68,MutS_V|PF00488.17|9.4e-23 S_Transcript_3484:2-1840(+)
AAGGCGGGAGCCCTCCATTTTCCGACATTTTCTTCAGTTCTTCTTTCTTCAGTTCTTCAACCATCATCATCATCATCATCAACAACAACAATTATGCTAACATCAGCTGTTTTCCGCAACACAATCACCTCAATTTCGATCATTCCAACAAAAACCATAAACCCCCATTCAAAATCATCATCGAAACCAAAGAGTCGATTCTCCATAGTCCAATTCCGAATTCGCGCCACTCTCAAACCCCTAATACACCCCCAATCCCCAAACCAAACACTCGAATTCCACGACGACCATGATCCAGAAAAAAACCCCATACCTAGGGTTTTGCTAAACAGTCTTAGGGTTTTAGAGTGGGACAAGCTTTGCGACGTCGTTTCTTCTTTTGCCGGAACTTCCTTTGGCCGCCTTGCCTCCAAGGAACAATTATGGGCGATTGATCAGACTTATGAAGAGAGCTTGGAGCTACTAAGGGAGACTAATGCCGCTGTTGAAATTCATAAGTATAATAATTCCTTGATGGATTTCACCTCCATTGATGCCCTTCTGGTGAGGACTGGCATTGATCGAGCACGTAGAAGCTCACCAGTGAGCAGACCGGAAGCACTAGCTGTTGCAGAAATGCTGCAATTTGCAGAGACTTTGCAGCTTAACATTAAGTCAGCGATCAAGGACAATGCTGATTTGCTGGAGCGTTTTATGCCTCTAGCTGAGTTGATACTGGGTTGGGAGATTAATAAATCATTGGTTAGGACAATCCTTCGAGTTGTTGATGAAGATGGATCCATCAAAGACTCATCGAGTCCAAAACTTAAACAATCACGCTGGCGGGTTTTGCATCTTGAAAGCAAGTTAAATCAGTTGATGAGCACTCTAGTGGCAAATGAAACCAATGAACTGCCTTCCTTGGAAGCCCGTAATATTGATGGGAGATGGTGCATCAGATCAGGAACAGATCAACTTACTAGCTTCCAGGGGCTGCTGCTTTCCAGTGGATCTGGCATGGGAAACATAATAGAACCAATTTCAGCTGTTCCGTTAAATGATGAACTACTGGAAGCTAGGTCATCTGTAGAAGATGCTGAGGCTGAAGTTCTTTTGGATATAACAGAAAAGATGAAAATGGACCTTGCTAGCATAGAATTACTGTTGAAGAATATAGTTGAACTTGACGTTGTAAATGCCAGAGCAAGCTATGGTCTCTCAATGAGAGGAAACTGTCCTGATTTACTTCTGTTTGACAAGAAGAATATTCCCTTACACTCAGAAGGCTTCTCACCTGAGGTTAAACTCGCCAATTTTACCAAGAAGCGATGGATGTTGTGTTTGCCCAAGGCATACCATCCTCTGTTACTTCAGCAGTACCGGCATAATCTCCGGGAAGCCAAGAAGGATGTTGCTGTTGCCACTGCAGAACTCAGACGAAGAAAGCTGTATGGAGAAAACGTCAACCAGCAAGAAGCCAAACAAATAGATCTTCAGATGCTAGAAGAGAAGGTTGCCCAACTGGAAAATACACACCCGGTTCCAGTTGACTTACTTATTGATGAAAGTACAAGGGTTCTTCTTATAACTGGCCCTAACACAGGAGGCAAAACTATTTGTTTGAAATCAGTTGGACTTGCTGCTATCATGGCAAAAACAGGTCTTTATGTTTTATGTTCTGAACCAGCACGAATCCCATGGTTTGATTGTGTTTTTGCTGATATTGGTGATGAGCAGTCATTGTCTCAGTCTTTGTCAACCTTCTCTGGACACCTCAGGCAGATTAGTGATATACAAGCAAAGTCAACCAATCAATCACTGGTGCTTTTAGATGAAGTATGTATAGTTTATACCATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3484.p1 GENE.S_Transcript_3484~~S_Transcript_3484.p1 ORF type:5prime_partial len:613 (+),score=117.68,MutS_V|PF00488.17|9.4e-23 S_Transcript_3484:2-1840(+)
KAGALHFPTFSSVLLSSVLQPSSSSSSTTTIMLTSAVFRNTITSISIIPTKTINPHSKSSSKPKSRFSIVQFRIRATLKPLIHPQSPNQTLEFHDDHDPEKNPIPRVLLNSLRVLEWDKLCDVVSSFAGTSFGRLASKEQLWAIDQTYEESLELLRETNAAVEIHKYNNSLMDFTSIDALLVRTGIDRARRSSPVSRPEALAVAEMLQFAETLQLNIKSAIKDNADLLERFMPLAELILGWEINKSLVRTILRVVDEDGSIKDSSSPKLKQSRWRVLHLESKLNQLMSTLVANETNELPSLEARNIDGRWCIRSGTDQLTSFQGLLLSSGSGMGNIIEPISAVPLNDELLEARSSVEDAEAEVLLDITEKMKMDLASIELLLKNIVELDVVNARASYGLSMRGNCPDLLLFDKKNIPLHSEGFSPEVKLANFTKKRWMLCLPKAYHPLLLQQYRHNLREAKKDVAVATAELRRRKLYGENVNQQEAKQIDLQMLEEKVAQLENTHPVPVDLLIDESTRVLLITGPNTGGKTICLKSVGLAAIMAKTGLYVLCSEPARIPWFDCVFADIGDEQSLSQSLSTFSGHLRQISDIQAKSTNQSLVLLDEVCIVYTI*

Click here to download the sequence:
Link to NCBI Protein BLAST