Transcript Information: S_Transcript_349811.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value4E-86
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1520779755489
Replicate 20.85958920353954
Replicate 30.71854815910132
Condition 2: 8 Hour
Replicate 10.89240450100557
Replicate 20.51652175791577
Replicate 30.49214078164459
Condition 3: 24 Hour
Replicate 10.69348836478077
Replicate 20.65407825617164
Replicate 31.0918633941609


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_349811.p1 GENE.S_Transcript_349811~~S_Transcript_349811.p1 ORF type:complete len:693 (+),score=92.09,SEO_C|PF14577.2|5.7e-79,SEO_N|PF14576.2|8.8e-17 S_Transcript_349811:43-2079(+)
ATGGCCAACAGCAGCGTTCCACTCGATGACGTCGACTTGCTTTTTGACTACGCCAAGAGTGTGTTTCATAAAGCTCCTCATTGGGGATTTGAAAACATAGACTACTTCAAGGATGGGCACCATGAAGCTTCACACAAGGAAATTATAATCCCCCAAAAATTTGTACGTATCGTACATGACGTTTCCAATAAGCTACCAACTACAACTTCACCTAGAATTTGGCGCCGCTCAAGTTCATCAAGTGACGCGGAACCGTACGAAGACATGTTGCGGGTGTACACATGGGACCAAAAGCCGGTGATTGTGGCGGCGGCTTTGTCACTAATCTTTGCAAAATATGGAGTTATGTTTGAGCTCTATAAAAAACATCCTTCTGCTACCTCATTGGCCGCCCTTAAGCCACTAATATTTTCTATACTAGACTTGCCCGAGTTCCACCGGGTTGACTCAACCCTCCGAAAGCTTACTATCAAATTCCTAGACCGTTACATCTCCAGAATGTTGGAAACAACTGAGTTGATCCTCCAAATAAAAAAGTTGTATGAGAAGAACATCAATTACTTCACCCCTAATCAAGATCCACCTTTTCTATCTAATTCTAATGATATTCCAGAAGCTACAGCTAATGTTATATCTGCAGCCTGTGGTTGTGCCCTGTTCCTCAATATGCCTGTTGCCACCCAAGAGAAATTTGATGTAGAAGCTGTGTTGAGTGCCACCATGAAGTGGACAGATCTTAAGCCAGTACTTTGTAATTGCAATGAGCATATAGAAAAAATGAAGTACGAAGAGAATTATCGCAATCTCATTGCTCTCTTTGAAAATCCTCAACCTGACAACATTAGTGTTCTCAGGCATTTGATACATCTGGAGGAGGATGAGGACACACGTCCTCTTATCCGAGGCACCACCCAAACAAAGATTGAAGTGCTTAAGGAAAAACAAGTGTTGTTACTCATATCAGAACTGGATATCTCCCATAAAGAGTTGATGATCCTAGGCAACGTGTACCAAGAATCAAAGGGCCAATATGAAATTGTTTGGCTCCCAATGGTGGGCAAGTCCTATTTGTCGAATGAAGAAGAAAAACAAAGATATAAGAAGCTCCAATCAAAGATGCCTTGGTATACTTTACAATACCCAGAATTGCAAGAACCAGCAGGCATAAGATATATAAAGGAGAAATGGCAATTTGAAAACAAGACAATTGTTGTTGTGTTAGACCCACAAGGGAAAGTTATATGCAAAAATGCCATTCACATAATCTTCATTTGGGGAAATATGGCCTTCCCTTTTACTACTCTAAAAGATGAAGATCTTTGGAAGGACAAGACCTGGAACCTTGAGCTACTTGTGGATTCCATTGATCTTACTATCAATGACTGGATACAAGAAGGAAAACATATATGCTTATACGGAGGGGATGACATAGAGTGGATCAGAAAATTCACAAGCAAGGCAAAAGAAGTAGCCACAAATGCTGGAGTAGCCCTAGAGCTAGTGTACATTGGGAAAAGCAATGCAAATGATGAGCAATCAAAGGAAATCATAAATACCATAGAAAACGAGAATGTCAGCAAATTTTGGGATGAACCAACCTGGTGTTGGAAATTTTGGACAAGGCTTGAGTACATGTTATATTCGAGAATGCAACTTGCTAGTAAGAATGACAATGTAGAGAATGACCATATATTGCAAAGACTCAAGAAAATCCTTAGCTTCAATGTGAGCTTGGGCGACGAATCGCAAGGATGGGCAATCTTCTCCTGTGGATCGAGTGAAATAGTTACTGCGAAAGAAGAAATGATAACGCAAAGCTTTGGGAGATTCGAACTTCATTGGAAGCAAAATGCAAATGAGAAGGGGTTTGTAGCAGCTCTTAAGGAGGATCTCCAGCAACTTCCAACCCCTGAGCATTGCAGTAGGCTCATTCTTCCTCATATTGAAGATGATATTTCTGAAATGCCAGTATTTTGTCCTGACTGCAATTGTTTGATGGAAGTCTACACCGTTGTACGTTGTTACAGTGATGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_349811.p1 GENE.S_Transcript_349811~~S_Transcript_349811.p1 ORF type:complete len:693 (+),score=92.09,SEO_C|PF14577.2|5.7e-79,SEO_N|PF14576.2|8.8e-17 S_Transcript_349811:43-2079(+)
MANSSVPLDDVDLLFDYAKSVFHKAPHWGFENIDYFKDGHHEASHKEIIIPQKFVRIVHDVSNKLPTTTSPRIWRRSSSSSDAEPYEDMLRVYTWDQKPVIVAAALSLIFAKYGVMFELYKKHPSATSLAALKPLIFSILDLPEFHRVDSTLRKLTIKFLDRYISRMLETTELILQIKKLYEKNINYFTPNQDPPFLSNSNDIPEATANVISAACGCALFLNMPVATQEKFDVEAVLSATMKWTDLKPVLCNCNEHIEKMKYEENYRNLIALFENPQPDNISVLRHLIHLEEDEDTRPLIRGTTQTKIEVLKEKQVLLLISELDISHKELMILGNVYQESKGQYEIVWLPMVGKSYLSNEEEKQRYKKLQSKMPWYTLQYPELQEPAGIRYIKEKWQFENKTIVVVLDPQGKVICKNAIHIIFIWGNMAFPFTTLKDEDLWKDKTWNLELLVDSIDLTINDWIQEGKHICLYGGDDIEWIRKFTSKAKEVATNAGVALELVYIGKSNANDEQSKEIINTIENENVSKFWDEPTWCWKFWTRLEYMLYSRMQLASKNDNVENDHILQRLKKILSFNVSLGDESQGWAIFSCGSSEIVTAKEEMITQSFGRFELHWKQNANEKGFVAALKEDLQQLPTPEHCSRLILPHIEDDISEMPVFCPDCNCLMEVYTVVRCYSDD*

Click here to download the sequence:
Link to NCBI Protein BLAST