Transcript Information: S_Transcript_350380.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.14308065180205
Replicate 20.32619715743638
Replicate 30.22309761391452
Condition 2: 8 Hour
Replicate 10.40128422639766
Replicate 20.54125440257403
Replicate 30.34380399362873
Condition 3: 24 Hour
Replicate 10.49914384319906
Replicate 20.79201492067881
Replicate 30.40680716782445


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_350380.p1 GENE.S_Transcript_350380~~S_Transcript_350380.p1 ORF type:3prime_partial len:744 (+),score=150.28,UBN2_3|PF14244.2|1.8e-38,UBN2_3|PF14244.2|6e+03,rve|PF00665.22|5.4e-23,Retrotrans_gag|PF03732.13|2.7e-09,UBN2|PF14223.2|0.00024,UBN2|PF14223.2|2.7 S_Transcript_350380:380-2608(+)
ATGAGTGCTGTGCGCAACATTTCTATGTCTGATATGATGAATCCTTTGTTTCTGCATCCTAGTGATGGACCTTCATCTATCAGTTTGTCTGAGAAACTTACTGGAGCTGCAAATTATAGATCATGGAAGCGAGCTATGGAGATACAGCTAGTATCAAAGAGAAAGCTAGGGTTTGTGAATGGAACAGTTGCTAGACCTACTGAGGACACATCTAAAATGGATCAATGGGACACCTGCAACAGTACGGTAATATCCTGGTTACTTAATTCAGTTTCTGATCCTATTCAGAAATCTATTCTGTTCATTGATTCGGCTGCTGAGATTTGGAAACAGCTGGAAACTCGTTTTGCTTTAAGCAATGGTTCTAGAAAATACAAATTGAATAAAGATGTACATTCCTTGAGACAAGATGGCAAGTCTATAAGTGATTTTTACACTAGCATGAGAGGATTATGGGAAGAGTCTGAGTCATTGGTGAATCTGCCTAAATTGACTACTATTACTGCTGAGATGAGTATGTTTCTAGCTGCTCTAGATCAACATAAAGCAGAACAAAAATTATTTCAATTTCTGAATGGTTTGGATGATATATATCAAAATCAAAGGAGCAATATTCTTATGTTGTCACCTCTGCCTTCTGTGGAAGCTGCATGTTCTCTTCTTCAACAAGAAGAATCACAACAAGATATTTTGAGTGTTCATGGCAAAATGAATACTGAACATTCTGCCTTATACAGCAAAGGCAATACCAGTGCTCACAAAGAAGAGAAACCATATGCTAATGCTATTTGTTCTGCTTGTGGAATGAAAGGACATACTGTTGCTAGATGCTGGAAGACCATAGGATATCCTTCCTGGCATCCATTACATAAGAAAAATCCTTCAAAACCTAAGTTCTATGGTCAGCAGAATTATTCTCAACAATTTTCTTCCAGAAATATGCATACTCATCCTCATTCTGCTACTAAATTTCCTCATTGGGAAAAAGGCAAAAAGGCTGCAAATAATGTGTCTGGTCAACATGATGGAGCTTCTGCTCCTGGAACTTCTGGAAACATTGTATTCACTCAGGATCAGTTTGCTCAGCTACTAAAGAACATGCCAGGTTCTTCTGCTGGGACTTCATTTTCTCTCAATACAGAAGCTGATGATGATATTGAGGCCAATTTTGCAGGTATTGCATTTTGTAATCATGTTGCTTCTATGATGGATGATTGGATTATTGACTCCGGGGCATCTGATCACATGACTTCTGATTTTTCTAAAATGCATAATTCTAAACCTGTTTCTTCTGCTCTTCACATAAATCTGCCCAATGGCCAAACCTCATCTATCACTCATATAGGCAATGTTTTGTTGTCTAATGATCTGGTTCTTAAGAATGTGCTTTGTGTCCCCTCTTTCAAACATAATCTGTTATCAGTTAACAAACTTGTTAAACATGATAATTGTGTGGTACATTTTTTTGATAAATTTTGTATCATACAGGACTCTCTTACTCAGACTGTTAAAGGAGTTGGCAAAGCTATTAATGGTCTGTACTATCTTCTGAACTGTCCTCTCAGTCAGATTGATTCAAGACTCCTATCTGCTCCTGTAATCATTTATGATTCAGGTTCTCTTTCACAAAATAATAATGCATATAATTCTGTGTGTGCGTTTGATTCAGCTTGTAATAATTCTGTTATGCAGCATGATGACTATAATACATGGCATAATAGACTTGCTCATGCTCCTTTGTACAAGTTGAAACAGATTCCTTGTATTGCTTCCTCTCTTGGTAATGCTAATAAAGATCAAGTTTGTTTGACATGTCCAATGGCAAGATTTACAAAACTTCCTTTTCCCCCTAGTTGCTCTATTTCAGAATCTGTGTTTGATCTTATTCATATTGATATTTGGGGACCTTACAAAGTTCCTACTAGAGGCAACTATAGATTTTTCTTAACTATAGTTGATGATCACAGTAGGGCAACTTGGGTTTATCTTCTCAGACATAAATCTCAATCCTTGTCTACTCTTCAATCTTTTCTGGCTTTTGTTCACACTCACTTCAGTAGACAAATCAAGCATATCAGATCTGATAATGCTATTGAATTTGATAGTGGTCCTTGTCAAGCTTTCTTTTCAGAATATGGTATTCTTCATCAAACTTCTTGTGTTGATAGACCTCAACAAAATGGCATTGTTGAAAGGAAGCATAGACACTTGCTAGAATTATCTAGAGCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_350380.p1 GENE.S_Transcript_350380~~S_Transcript_350380.p1 ORF type:3prime_partial len:744 (+),score=150.28,UBN2_3|PF14244.2|1.8e-38,UBN2_3|PF14244.2|6e+03,rve|PF00665.22|5.4e-23,Retrotrans_gag|PF03732.13|2.7e-09,UBN2|PF14223.2|0.00024,UBN2|PF14223.2|2.7 S_Transcript_350380:380-2608(+)
MSAVRNISMSDMMNPLFLHPSDGPSSISLSEKLTGAANYRSWKRAMEIQLVSKRKLGFVNGTVARPTEDTSKMDQWDTCNSTVISWLLNSVSDPIQKSILFIDSAAEIWKQLETRFALSNGSRKYKLNKDVHSLRQDGKSISDFYTSMRGLWEESESLVNLPKLTTITAEMSMFLAALDQHKAEQKLFQFLNGLDDIYQNQRSNILMLSPLPSVEAACSLLQQEESQQDILSVHGKMNTEHSALYSKGNTSAHKEEKPYANAICSACGMKGHTVARCWKTIGYPSWHPLHKKNPSKPKFYGQQNYSQQFSSRNMHTHPHSATKFPHWEKGKKAANNVSGQHDGASAPGTSGNIVFTQDQFAQLLKNMPGSSAGTSFSLNTEADDDIEANFAGIAFCNHVASMMDDWIIDSGASDHMTSDFSKMHNSKPVSSALHINLPNGQTSSITHIGNVLLSNDLVLKNVLCVPSFKHNLLSVNKLVKHDNCVVHFFDKFCIIQDSLTQTVKGVGKAINGLYYLLNCPLSQIDSRLLSAPVIIYDSGSLSQNNNAYNSVCAFDSACNNSVMQHDDYNTWHNRLAHAPLYKLKQIPCIASSLGNANKDQVCLTCPMARFTKLPFPPSCSISESVFDLIHIDIWGPYKVPTRGNYRFFLTIVDDHSRATWVYLLRHKSQSLSTLQSFLAFVHTHFSRQIKHIRSDNAIEFDSGPCQAFFSEYGILHQTSCVDRPQQNGIVERKHRHLLELSRA

Click here to download the sequence:
Link to NCBI Protein BLAST