Transcript Information: S_Transcript_351558.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15375831238429
Replicate 20.11684674296228
Replicate 30.062156549150315
Condition 2: 8 Hour
Replicate 10.20534800497962
Replicate 20.19388217405637
Replicate 30.17446769825936
Condition 3: 24 Hour
Replicate 10.094657655953465
Replicate 20.087294411464025
Replicate 30.13357847301698


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_351558.p1 GENE.S_Transcript_351558~~S_Transcript_351558.p1 ORF type:3prime_partial len:2077 (-),score=334.03,RVT_1|PF00078.23|2.9e-24,RVT_3|PF13456.2|3e-20,Retrotrans_gag|PF03732.13|3.2e-12,RNase_H|PF00075.20|8.6e+03,RNase_H|PF00075.20|4.2e-06,Asp_protease_2|PF13650.2|1.6e+04,Asp_protease_2|PF13650.2|1.7e-05 S_Transcript_351558:2-6229(-)
ATGGCACCAAAGAAATCTGCTGCTTCTCGCTCTAACGAATCTGTTAGATCGGCCGCCAGGAGGACTGCTGGATCATTTTCTCATGCTAGATCTGCTTCACAAGACTCTCTCGAAAGTGTCGGCGTCGTGACTCGGCGGATGGCGAGAGCCCTCGCAACGACAGCTTCTGGCCCATCAATCCCGCTGGTAACCCAAAGGTTCGGCGAACAACCTATGTTTGACTCTATTCCCCTTGTGGAACCTCTTCAAGTGGTTTTCCTGCAAAGCCAGAAGGACAAGGCGTCACTCCAAGTAGACAGGCTCCATACCAATGCTGTTTTCGAACCATTTGGCGAAAAAACGGACGACCTTGCTAGCAGTGGCTCTTCTTCTGGATCACCACACAAAGAGATTCCTGAGTTCTCATCCCAGTCTTCTCACGGCTTTGAGGTGCCCGCCATGGTCATTGAAACCACGAATCTTGAGGAGCAGATGGCCAACATGCAGAAGATTCTTGAGAAGCTTTCAAAGGATAGCGAGGAGAAAGACGCCGTCATCAAGTGTCAGAACGAACAAATCGCCGCCTTATCTAAGAAGTTGGAGAAAAGGCCTCAGGGTGAAGAAGAAGGAAGCGACAATGACCAAAGTGAATCTTCCAGGCGTGGTTCATTCTCCGTGCGTCAAATCCAGGAGCTGATTAGGAGCGCTGTCAAGGCTCAGATCAACGGAGGCTCAAGCGATAATCACTTCTATACGAAACCGTATACTAAGAGGATTGATAGGTTGAGAATGCCTGCAGGATACCAACCTCCCAAGTTCCAGCAATTTGATGGCAAAGGGAATCCTAAACAACATATTGCTCATTTCATTGAGACATGCAATACCGTTGGCACAGAAGATGATTTGCTGGTGAAACAGTTCGTTCGCTCACTAAAAGGCACTGCTTTTGACTGGTACACTGACTTGAAGCCGGAGTCCATCGATACCTGGGAACAGATGGAAAGAGAGTTCCTCAACCGCTTCTACAGCACTCGTCGTACAGTGAGTATGACTGAACTCACCAATACCAAGCAATGGAAGGACGAGCCCGTTGTTGATTACATCAACCGCTGGCGTGCGCTTTGCCTGGAGTGCAAGGACCGTCTATCAGAGGTCTCAGCAGTGGAGATGTGCATTCAAGGGATGAAGTGGGACTTACTTTACATCCTCCAAGGGATTAAGCCCAAGTCATTCCCGGAGCTAGCAACGAGGGCGCATGACATGGAACTCACAATTGCTAGTCATGGTGGTGGATCGTCTTCCTCATACGATTCAAGGAAGGAGAAGAAAGACTACAAGAAGCCTGAAAGGTCAAAGGTTTCAGGCAAAGAATCCATGGTGGTAATTACATCTCAACCGGTCAAGATTTCTGCTAAGACAAAACAAGAAGAGAAGAAAGGAGTCCCTGCAAAGGAATCATGGAAAGCTCGACCAACTCTGAAAGAGTTGCAGGAGAAGAAGTATCCGTTTCCTGACTCTGACCTTTCCGGGATGCTGGATGATCTGCTCGACAAGGGAGTCATCGAACTACCCCAACCAAAGCGTCCAGAGGAAGCTGGTCGAACAACTGACCCCAAATATTGTAGATACCATAGGGTTGTAAGCCATCCCTTAGAGAAATGCATTACTCTGAAGGAACGGATCATGCAACTGGCTAAGGATGGCAAAATCCTACTAGATTTGGATGACTCAGTCGAGTCAAATCATACTTTCATTCAGTCAAAAACTGAACATGTTGACACTAATTCTTGCCAATTCGAGCTGATTCAATTCGGTAGCTTGGAGCCCATCGCGGTTCACAAAATCAAAGAAAATATCCTAACGGAGTCGAATCTTGTTGACGACTCCAGTAATGAGGACGAGGAAGGGTGGACCTTAGTTACAAGGAGAAAGTTGAGGAAGCAAGCTCAGCTAAAGCCACAACCACAACCAGCTCGTCAAAAGGGAAAACAAAGCAAGAAGAAAGGCTCTCGCCATTCCAAGAGAAAAACACGTAAGGCTAAGGTAAGTAAGTCAAAGGTCTTGCCAATCGACTTATTGGAGCAAGAAAGGAGAAGGGCTATCACTTTGGAGGACTTCTTCCCTAGTGACTACTTTGATACAGTGGCTGTGAACATGGTCTCGGTCTCAGAGGTCGAAGAAATAGGCGAAAACAAAGAAGAGACGCCTACTAAGTCAAGTCATCACTTTGACCCTGTAAGGGATGCGAAGATCTTCGAAGTGTTGGATGCTTTGCCAGCTCGTATGGGATGGCGACAGACCTTCCACCTCCCTGAAGAGACAAGGCAGTTTGTAGCTCTCGCCCTTCATCACCCAGAAATATTTCAAGGAAAGTTGAAAGATGACTCAGGCGTCACAAAAAGTTCAGAAAAATGCGTTGCATGCAGCACTGCACTGGCTTTCACAGATGAGGATCTTCAGCTAGGCTCTAAGCCACATAATCGACCATTGTATGTTTCAGGCTACATCCGTGGACAAAAAGTTGGTCGCATGCTAGTTGATGGGGGATCAGCCGTGAACATCATGCCCAAGGCCATTATGAATGATCTCGGCATCTTGGTAGAAGAACTATCAAAAAGCCGATTGACAATCCATGGTTTCAATCAAGGTGAGGAGCGAACAATAGGCATGATTAGAGTAGAACTGACTATCGGGGATATGACATCGCCTACTCTCTTCCATGTTGTGGATTGCAAAACATCCTACCGCCTGCTCTTGGGGCGTCCATGGCCCCATGAGAATGGCGTCGTCGCGTCAACACTCCACCAATGCTTGAAGTATTTTCGAGATGGCGAGAAGAAAGTGGATGGCGACGTCAAACCATTTTCTGAGGCAGAGTCTCACTTTGCAGACGCTAAGTTTTACAAGGAGGGAAAGTCACCACCTGAAGTTCTACCTTCCATAGTCCCATCCATTGGGAGTGCAAGCTCAAGTGGCGCAAGTGTCATTCCCTCGAATGAAATGAAGATCACACGGGAAGTTCAAGGAGTAAAAAAGGAACAAGTCTTGAAAAAGAAGCAAACACAAAAGAATAAAGAGCCCTCTTTAGCTCCCGTGCTGCGCTACATCCCTAGATCCCGGCGTAAGGAAGGAGAATCTCCTTTTGCTACATGTGCTAGTGAAAAGGATGAGGCCAAGAACACCGAAAAGTTTGTAGAATCGGATCTTCAAATAGTAAGGGACAAAGGCATCCTCCCCGTGGCCAAGTCAACACCGCCAAAGGTCACCAAGCCTCCATTGCCAGGATTCGTCTCCGGGTCACAACCGCCCGAGAAAGAAACTAGTTTTAGCCTGACTGCCTACAAACTTATGGCTAAAGCGGGATATGACTTCAACAATCCGACAGCTCTTGGAAAATTGACGGAGGCCAAAGCATATGGATTGAATGATACTCAGAGGAAGTTGCAGGCACAAGGTGAGCTTATCAAGGCGTCCAAGGCTGGCTTAGGCTTTCCTAATAGCAAGCCCGTCAAAATCACCGCTCAGCGAAGGGAATCTCATTCATCTTCCCTCTCTGGTGAAGAGGAAAGTAAAGTAGAGCGGCCTCTGCCTAGGTCTCGAACGTCGGTGTTTGATCGTCTTCAAAAAGGCTCAGTATTTAGCAGACTTGGCGATAGAGGTAGCTTATCTAAGAAACTCCCCAGTTGGGAAATCAATGCTGAGCTCACACCCACAGTATTCAACCGTCTTGGAACTAGTTCGAGTGACGGCAGTGTCAAACCTAACTCAAACCTTCCGTCAAAGAGAACAACTTCCCATAAGGTAGACGAAAAGATGAAATCTCCCAAACTCCAGTGGAAGAGAAAATATCCGGTAGAAGAAGTTTCATCCAACAACGAGGTAAGAGGAAGCGTTCATTCTTGCCTGAAACGTCCTGCAACCATCGAGATAGAAGCCCCAAAGTGTCAATGGAGAAAGAAAGAGCCTTTGAAGCAAGTTCTATTTGATAAAGAAGAAAGACGAAGTGTTCATTCTCGTCTAAAACGTCCTGCCACCGTGGAGGTACAAACCTCAGAAACGGTGCGCTTTAAGAGATTGACCATAGTCCTTGAGGACCAACAAGTCAGCATTGATGATGAACAAGTGCAGTTTGTGTGTTCATCCAACCATATCACGGTTGAAGACGAGGAAGATGCAAGCTCCGAGTCAGAAACAAATGAGGCACCTCAAACCTTGGAGGACGGAGGGCAAGCTACTGTCGACGAACTTAAGGAGTTAAACCTTGGAACCACCGAGGAACCACGTCCAGTCTTCGTCAGCACATCGCTCTCACAAGAGGAGGAAGTGAAGTACACTTCTCTTTTATCTGAATTCAGGGACGTGTTTGCATGGACCTATAAGGAAATGCCTGGCTTGGACCCTAAGGTTGCAATGCATCGACTGGCCATCAGAAAGGAAGTCACCCTTAAGAAACAGCCCAGGCGTCGTTTCCGTCCTGAGTTGATTCCAGAAATAGAGACGGAGGTCAATAAGTTGATTGATGCAGGTTTCATCCGGGAAGTCACATACCCAACATGGATCGCAAACATCGTGCCAGTGAGGAAGAAGAATGGCCAACTCCGTGTTTGTGTAGATTTCAGGGATTTAAATGAAGCTTGCCCAAAAGATGACTTCCCATTGCCGGTAATTGAGCTCATGATCAACGCCACCACAGGTCACGAGGCATTGTCTTTTATGGACTGTACTGCCGAATACAACCAAATCCTAATGGCGCCGGAAGATGAGGAAGCCACTGCCTTTCGAACTCCAAAAGGTATCTTCTGCTACAAAGTGATGCCGTTCGGATTGAAAAATGCGGGAGCAACTTACCAGCGCGCCATGCAAACAATCTTCGAAGATGTGATGCACAAGATAATTGAGTGTTATGTGGATGACTTAGTGGTCAAATCTAAGGCAAGGGTCGAGCACCTACAAGATCTCCGCAAGGTCTTTCAAAGGCTGAGGAAGGCTAAGCTCAAGATGAATCCACTCAAGTGCGCCTTTGGAGTCACATCTGGCAAGTTCTTAGGCTTTATTGTTCGTCACAGGGGAATCGAAATTGATCAATCCAAAATTGATGCAATTCAAAACATGCCTCCACCAAGGAACTTAAGAGAGCTTCGAGGGTTGCAAGGGCGCTTGGCGTACATAAGGCGGTTCATCTCAAATTTGGCAGGGCGATGCCAGCCTTTCAGCCATTTTATGAAGAAAAATAACTCTTTCATCTGGGATGATTCCTGTCAAAGGGCCTTCGATAGTATCAAGAGATATCTTTCAAGTCCACCAGTCCTAGGTGCTCCAATTCCAGGAAAACCATTGATCTTGTATGTTGCTGCGCAGGAGCACTCATTAGGGGCATTATGTGCCCAAGAGGTTGAAAAAGGAAAAGAAAGAGCACTTTACTACCTCAGTCGTACACTTGTTGGAGCTGAGTTGAGATACTCACCAATAGAGAAAATGTGCCTCGCACTCTGCTTTGCCGTCCAGAAACTAAGGCATTACTTCCAAGCACATACAGTAAGGGTGATCTCCAAAGTAGACCCTATCAAATACATCTTGTCAAGACCAGTTCTTTCAGGAAGGCTCGCCAAATGGGCAGTCCTCATTGAGCAATATGACATTGTTTATGTGCCCCAAAAGGCAGTAAAGGGTCAAGCCTTGGCAGATTTCCTAGCCGATCATCCAATTCCTACTGAATGGGAGTTGTTGGATGATCTTCCAGGTGAAGACATATTCTTTGTAGAAGTTTTGCCTCCATGGGAGATGTACTTTGACGGCGCTGCACGTAAGGATGGTGCTGGGGCTGGAGTCATCTTTATCTCCCCTGAAAAGCACATTTTACCTTACTCATTTGTGCTGACAAATCTGTGCTCGAACAACATGGCGGAGTACCAAGCGCTCATTCTGGGGCTAGAAATGGCGATTGAAATGAGTATCAAAGACCTTGATGTCTATGGAGATTCCAAGCTAGTGATCAACCAACTACTCAACGAGTTCGAGGTGAAAAAAGATAGCCTGTTGCCTTTTCATAAGTATGCCTCGCACTTGCTGTCTAAGATTGACATTGTAAGGCTGGAACACGTTCCTAGGAGTACCAATAAGATGGCTGACGCATTGGCAAATCTTGCAGCCTCTTTGGCACTGGCAGCAAAAGGCGTCACTACTGTTCCAGTATGCAACAAATGGGTTGTGCCTTCCTTTGACATCGAAATCATAGAGGAGTCTAACGTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_351558.p1 GENE.S_Transcript_351558~~S_Transcript_351558.p1 ORF type:3prime_partial len:2077 (-),score=334.03,RVT_1|PF00078.23|2.9e-24,RVT_3|PF13456.2|3e-20,Retrotrans_gag|PF03732.13|3.2e-12,RNase_H|PF00075.20|8.6e+03,RNase_H|PF00075.20|4.2e-06,Asp_protease_2|PF13650.2|1.6e+04,Asp_protease_2|PF13650.2|1.7e-05 S_Transcript_351558:2-6229(-)
MAPKKSAASRSNESVRSAARRTAGSFSHARSASQDSLESVGVVTRRMARALATTASGPSIPLVTQRFGEQPMFDSIPLVEPLQVVFLQSQKDKASLQVDRLHTNAVFEPFGEKTDDLASSGSSSGSPHKEIPEFSSQSSHGFEVPAMVIETTNLEEQMANMQKILEKLSKDSEEKDAVIKCQNEQIAALSKKLEKRPQGEEEGSDNDQSESSRRGSFSVRQIQELIRSAVKAQINGGSSDNHFYTKPYTKRIDRLRMPAGYQPPKFQQFDGKGNPKQHIAHFIETCNTVGTEDDLLVKQFVRSLKGTAFDWYTDLKPESIDTWEQMEREFLNRFYSTRRTVSMTELTNTKQWKDEPVVDYINRWRALCLECKDRLSEVSAVEMCIQGMKWDLLYILQGIKPKSFPELATRAHDMELTIASHGGGSSSSYDSRKEKKDYKKPERSKVSGKESMVVITSQPVKISAKTKQEEKKGVPAKESWKARPTLKELQEKKYPFPDSDLSGMLDDLLDKGVIELPQPKRPEEAGRTTDPKYCRYHRVVSHPLEKCITLKERIMQLAKDGKILLDLDDSVESNHTFIQSKTEHVDTNSCQFELIQFGSLEPIAVHKIKENILTESNLVDDSSNEDEEGWTLVTRRKLRKQAQLKPQPQPARQKGKQSKKKGSRHSKRKTRKAKVSKSKVLPIDLLEQERRRAITLEDFFPSDYFDTVAVNMVSVSEVEEIGENKEETPTKSSHHFDPVRDAKIFEVLDALPARMGWRQTFHLPEETRQFVALALHHPEIFQGKLKDDSGVTKSSEKCVACSTALAFTDEDLQLGSKPHNRPLYVSGYIRGQKVGRMLVDGGSAVNIMPKAIMNDLGILVEELSKSRLTIHGFNQGEERTIGMIRVELTIGDMTSPTLFHVVDCKTSYRLLLGRPWPHENGVVASTLHQCLKYFRDGEKKVDGDVKPFSEAESHFADAKFYKEGKSPPEVLPSIVPSIGSASSSGASVIPSNEMKITREVQGVKKEQVLKKKQTQKNKEPSLAPVLRYIPRSRRKEGESPFATCASEKDEAKNTEKFVESDLQIVRDKGILPVAKSTPPKVTKPPLPGFVSGSQPPEKETSFSLTAYKLMAKAGYDFNNPTALGKLTEAKAYGLNDTQRKLQAQGELIKASKAGLGFPNSKPVKITAQRRESHSSSLSGEEESKVERPLPRSRTSVFDRLQKGSVFSRLGDRGSLSKKLPSWEINAELTPTVFNRLGTSSSDGSVKPNSNLPSKRTTSHKVDEKMKSPKLQWKRKYPVEEVSSNNEVRGSVHSCLKRPATIEIEAPKCQWRKKEPLKQVLFDKEERRSVHSRLKRPATVEVQTSETVRFKRLTIVLEDQQVSIDDEQVQFVCSSNHITVEDEEDASSESETNEAPQTLEDGGQATVDELKELNLGTTEEPRPVFVSTSLSQEEEVKYTSLLSEFRDVFAWTYKEMPGLDPKVAMHRLAIRKEVTLKKQPRRRFRPELIPEIETEVNKLIDAGFIREVTYPTWIANIVPVRKKNGQLRVCVDFRDLNEACPKDDFPLPVIELMINATTGHEALSFMDCTAEYNQILMAPEDEEATAFRTPKGIFCYKVMPFGLKNAGATYQRAMQTIFEDVMHKIIECYVDDLVVKSKARVEHLQDLRKVFQRLRKAKLKMNPLKCAFGVTSGKFLGFIVRHRGIEIDQSKIDAIQNMPPPRNLRELRGLQGRLAYIRRFISNLAGRCQPFSHFMKKNNSFIWDDSCQRAFDSIKRYLSSPPVLGAPIPGKPLILYVAAQEHSLGALCAQEVEKGKERALYYLSRTLVGAELRYSPIEKMCLALCFAVQKLRHYFQAHTVRVISKVDPIKYILSRPVLSGRLAKWAVLIEQYDIVYVPQKAVKGQALADFLADHPIPTEWELLDDLPGEDIFFVEVLPPWEMYFDGAARKDGAGAGVIFISPEKHILPYSFVLTNLCSNNMAEYQALILGLEMAIEMSIKDLDVYGDSKLVINQLLNEFEVKKDSLLPFHKYASHLLSKIDIVRLEHVPRSTNKMADALANLAASLALAAKGVTTVPVCNKWVVPSFDIEIIEESNV

Click here to download the sequence:
Link to NCBI Protein BLAST