Transcript Information: S_Transcript_351913.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value5E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.90843448746931
Replicate 20.37655653240134
Replicate 31.2161618053577
Condition 2: 8 Hour
Replicate 10.19852962281272
Replicate 20.43389931419175
Replicate 30
Condition 3: 24 Hour
Replicate 10.37283742187205
Replicate 20.50989180427779
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_351913.p1 GENE.S_Transcript_351913~~S_Transcript_351913.p1 ORF type:complete len:1289 (+),score=260.63,RVT_1|PF00078.23|2.1e-33,zf-RVT|PF13966.2|4.2e+02,zf-RVT|PF13966.2|5e-16,RVT_3|PF13456.2|3.6e+03,RVT_3|PF13456.2|4.3e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.4e-06 S_Transcript_351913:670-4536(+)
ATGCTTTTGGAAACTAAAGCCATTACAGTTCTTAGGGGTTTGGGGTTTGACTTTATTGAATGCTCTTCTGTTGCTGGTAGATCTGGTGGTCTTGCGTTGATGTGGAACAAGAATAGCGGTGCTGAACTAATAGTGAAAACTGATCAAATTTATGTCCTGAGGGTTGTTGATCAGGGTAGGAATGTTACTTGGTTCTTATGCTGTGTTTATAGATCTCCAAATCATGGGGATAAAAATGCTTTTTGGGAGGCGCTTGATTCTCTTATTAGGTTTTTCAATGGGCCTATGTGTATTATTGGGGATTTCAACGACATCCTGGATAGCCATGAAAAGTGGGGTGGGAAAATTGGAAGTAGCTCTTCTAATGGTGGACTCAAAAATCTTGTGAATACTCATGGTCTGTTGGATGTGGGTTTTTCTGGTAATCCATATACATGGTTCCGGAGAAGAGGGGATAGAGTGGTTTTGAAGGAAAGGCTGGATCGTGCTTTATGTACAGATTCTTGGAGGGTTCTGTTTGAAAATGCCTCAGTGCTTCATACAGCCGCCATTAAATCGGACCATTCTCCTATTGTTCTGAAATGTTTCGGAGATTCAGGGAGGGGTCCTACCCCCTTCAGATTTGAAGCTATGTGGGTTAGAGATAGGTCATGTGAGGAGGTGGTGAAAGAGGCTTGGCAGGAGGATATAAGGGGCTCCTTTGGCTTTAGGCTGAAACACAAGCTCAAGGTGACAAAAGTGAAGCTTAAAGATTGGAATCAAACTCATTTTGGAAACATCAAGATGAAAATTAGTAAAGTGGTGAAACAGATTGAGGATTTGCAGCAGGATACTTCTGGTAGAATTAGTGTGGAGGATGAAAAAAACTTGGTCCAAGAACTTACGGAACTTTACGCCAGGGAAGCAACTATGTATAGACAGAAGTCCAGAATTTCACACTTAAAAGAAGGGGACCTCAATACAAAATACTTCCATTTGTCTACTTTACAGCAGAGGAGGAGAAATTGTATTGATAGCCTGAAATTGGAGGATGGCAGCTGGGTTTATAGTGACCAAGAGATAGGAAGAGCATTTGCTGAGTACTTCCAAACCCTGTTTGCATCCTCTGAACCTCCTGAAGCTGATATCAACAATTTGTATGATGTTGTGATTACTGAGGAGAGTAACTCATTCCTCTGTGCTACCCCAGATGAGGAGGAGATTATCGATACCGTCAAGTCTATGGGTGCAACTAAGGCCCCTGGACCCGATGGTTTCCCTCCTATGTTCTATCAACAATTCTGGGAGACTGTGAAAGGTGACGTGATTAGCATGGTGCAAGCTTTCTTCCATTCTGGTTTTATGTTCAAGGAATTGAACCATACTTTTATCACTCTAGTGCCAAAATCAGACAAGGCAATGAAGTCTGCTTTTATTCCCGGCCGGTTCATCACAGATAATTCAATCATGATTAATGAGGTTCTACATTGCATGGCTAAAAGCAACTCTAAGGAGGGGCTCATGGCCATCAAAGTTGATATGGCCAAAGCTTATGATAAGATTGAGTGGTGTTTTCTGCTCCAAGTCCTGAGGGCATTGGGTTTTGATGATAAATTTGTGAATTTGGTGGAGCAGTGTATTTCTACCCCTACTTATTCAATGCTGATCAATGGTAGGCCCCAAGGGTTGCATAAACCTAGGAGGGGGATTAGGCAGGGGGATTCTTTATCTCCCTTCCTGTTTGTGATAGCTATGGATGCTTTTTCTAGGCTAATCCAAAGTAAACATAATGAGGGTAAGATCAAAGGGATTACAATTGCTAGAGAGTGCCCAGAAATTACTCATCTTCTATATGCTGATGATCTGGTACTCTTTAGTAGAGCGAATCCCCAAAATGCTATTGAGATTAAGGAGGCTCTGGAGACTCTTGAGATGTGGAGTGGTTTGAGTGCTAATAAGCATAAATCTGGCTTGTTTTTCAGCAAGAGAACTAAGCGAGAGAATATGTTTGTAGTCAAAAGAATTCTGCAGTTCAGGGAAATGGACAAAGATGCTACTTATCTTGGCCTTCCCTTCTTTAGAAAAGAAACTAGAACCAAGAGATTTAATTATATCAAAAATAGATTAAATGCTAGGTTGGAAGGATGGCAGGCCAAACATATGTCTTATGCAGCAAGGGCCACCTTAATCCAGTCAGTTGCCTCTGCTATACCTGTATATGCTATGTCCAGTAACATTCTGACCAAGAAGCTTACGAAGGAATTAGATGCTCTGATGAGAAATTTTTGGTGGGGATTTAAAGATGGGAAAAAAGGGATCTATTTCCTAGCTTGGGAAAACATCTGTAGGCCTGTGGAGGAGGGAGGACTGAACCTGAGAATGATGCAAGATTACAATATGGCACTTCAAGCCAAGCTATTCTGGCAGTTGGCAAAGGAAGATAAGCTCTGGGTGCAGCAATGCCTGTTAAAATACTGTAGAAGGCATGACCCACTTTTTGTGGAACCGGAGTCCATTGACTCTCCTCAATGGAAGGAGATCCTAAAAGCGAGACCTCTGATTGAAAAGGGTCTATGTATGCTGGTGGGAAATGGAAGAAACATTAATATTTGGACTGACCCTTGGGTCCCATACATTGAGGGTTTCAAGCCCACACCCAAAAACCAAGGGGAGGGTGAAGTGTATAAGGTGGACGATCTCATTGAGAATGGTCTTTGGAAAAGGGAGCTGATTTTTAATCTATTTGAGGAAGAATCTGCAATAGCCATAATGAAAATCAGAATATCACAGGAAGAGCTAGGAGATGTGCCTGTTTGGACGAAAGAATCTCATGGTGAATTTACTGTCAAAAGCTGCTATAATGAGGTGGTTAAAGATAAAGATCTTACAAATGCTCAGATGGAAGGAAAATGGTGGAAAAAAATCTGGAAATTGAGAATCCCACAAAGGGTCAAAATGCTCATTTGGAGATGTGCCACTGGGTGTCTCCCTACTAAAGAAGAGATTCATAAACGAGTGGAGAATTATGACAACTGTTGTACTTTCTGCAAAGGTGCAACTGAAACATTTGGGCATTTATTTTTTCACTGTCAAGTTTCTAAACTTCTCTGGTTTAGTTGCTTGAATGTTAGAACAGAAGGGATGGTACAATGGGGGAGGGTACAGTGGATTAAGGCTATCTTGGATCCGGGGGAAGCCCTTAGAATTCCTAAAGGGACAGAAGATAATTTTAGCTCCAAGGCAGGTCTGATGCTGGACTGCATTTGGAAAGCTAGAAACTCTTGTTTGCATGAAGGAAAGGAGCCACAACCTTTAGAGATTATTAAAGAGTTCGACAAAAGATGGGTGGAAGTTCAAGTGATATTTGGCCACCAAGAAGAACTTACACAGAAACAAAAGAGTAAGGTGCAACAGATATCTTTTCAAGGGGAGAATCTCTTCTTTGTTGATGCTGCTGTTAGGCCAGAAGCATCTTTCTGTGCTTGGGTCTGTGTCGATAAGGAGATGAGAGTCAAGGAAGGTGGAGCAGAGAAGGTCGTCTCATCTGACTCGCAATATGCTGAAGTTATAGCTGTGTACCAAGCCCTGCTGATGATCAAGGAAAGAGGGTTGAGGAACAATTATATTTATAGTGATGCGAAGAGGGTTGTAGATCAGGTGACCAGAGGACACCACCTCAGCTGGGAATACAGAGCAGTGCTGAATGAGATAATAGATCTGTGTAAGGGTACTGACACTAAAGTCCGATATGTCCCGAGAAAAGGTAATTGGTCAGCTCATAGTATGGCAGCATGGGCAAGTTTTAGAAATTTTGTAGGCGTTTTGGATGAACCTGAACTTCTATTGTCTGTTAAGAAGAGAGATGTAAGCTTATTTCCAGTTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_351913.p1 GENE.S_Transcript_351913~~S_Transcript_351913.p1 ORF type:complete len:1289 (+),score=260.63,RVT_1|PF00078.23|2.1e-33,zf-RVT|PF13966.2|4.2e+02,zf-RVT|PF13966.2|5e-16,RVT_3|PF13456.2|3.6e+03,RVT_3|PF13456.2|4.3e-11,Exo_endo_phos_2|PF14529.2|1.7e-07,Exo_endo_phos|PF03372.19|6.4e-06 S_Transcript_351913:670-4536(+)
MLLETKAITVLRGLGFDFIECSSVAGRSGGLALMWNKNSGAELIVKTDQIYVLRVVDQGRNVTWFLCCVYRSPNHGDKNAFWEALDSLIRFFNGPMCIIGDFNDILDSHEKWGGKIGSSSSNGGLKNLVNTHGLLDVGFSGNPYTWFRRRGDRVVLKERLDRALCTDSWRVLFENASVLHTAAIKSDHSPIVLKCFGDSGRGPTPFRFEAMWVRDRSCEEVVKEAWQEDIRGSFGFRLKHKLKVTKVKLKDWNQTHFGNIKMKISKVVKQIEDLQQDTSGRISVEDEKNLVQELTELYAREATMYRQKSRISHLKEGDLNTKYFHLSTLQQRRRNCIDSLKLEDGSWVYSDQEIGRAFAEYFQTLFASSEPPEADINNLYDVVITEESNSFLCATPDEEEIIDTVKSMGATKAPGPDGFPPMFYQQFWETVKGDVISMVQAFFHSGFMFKELNHTFITLVPKSDKAMKSAFIPGRFITDNSIMINEVLHCMAKSNSKEGLMAIKVDMAKAYDKIEWCFLLQVLRALGFDDKFVNLVEQCISTPTYSMLINGRPQGLHKPRRGIRQGDSLSPFLFVIAMDAFSRLIQSKHNEGKIKGITIARECPEITHLLYADDLVLFSRANPQNAIEIKEALETLEMWSGLSANKHKSGLFFSKRTKRENMFVVKRILQFREMDKDATYLGLPFFRKETRTKRFNYIKNRLNARLEGWQAKHMSYAARATLIQSVASAIPVYAMSSNILTKKLTKELDALMRNFWWGFKDGKKGIYFLAWENICRPVEEGGLNLRMMQDYNMALQAKLFWQLAKEDKLWVQQCLLKYCRRHDPLFVEPESIDSPQWKEILKARPLIEKGLCMLVGNGRNINIWTDPWVPYIEGFKPTPKNQGEGEVYKVDDLIENGLWKRELIFNLFEEESAIAIMKIRISQEELGDVPVWTKESHGEFTVKSCYNEVVKDKDLTNAQMEGKWWKKIWKLRIPQRVKMLIWRCATGCLPTKEEIHKRVENYDNCCTFCKGATETFGHLFFHCQVSKLLWFSCLNVRTEGMVQWGRVQWIKAILDPGEALRIPKGTEDNFSSKAGLMLDCIWKARNSCLHEGKEPQPLEIIKEFDKRWVEVQVIFGHQEELTQKQKSKVQQISFQGENLFFVDAAVRPEASFCAWVCVDKEMRVKEGGAEKVVSSDSQYAEVIAVYQALLMIKERGLRNNYIYSDAKRVVDQVTRGHHLSWEYRAVLNEIIDLCKGTDTKVRYVPRKGNWSAHSMAAWASFRNFVGVLDEPELLLSVKKRDVSLFPVE*

Click here to download the sequence:
Link to NCBI Protein BLAST