Transcript Information: S_Transcript_355068.p1


Annotated TAIR IDAT5G36170.1
Annotated Gene Namehigh chlorophyll fluorescent 109
Annotated Gene Symbol(s)HCF109, ATPRFB
Annotation TypeOrtholog
Chromosome Positionchr5:14236083-14237974 | Reverse length=456
E-Value1.4E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.3603399178419
Replicate 26.7992244548316
Replicate 36.843530999575
Condition 2: 8 Hour
Replicate 17.1084634390443
Replicate 28.3015035832948
Replicate 37.6415302734839
Condition 3: 24 Hour
Replicate 16.1825141954512
Replicate 25.4165084270516
Replicate 35.0761347230422


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_355068.p1 GENE.S_Transcript_355068~~S_Transcript_355068.p1 ORF type:5prime_partial len:159 (-),score=44.14,PCRF|PF03462.14|1.5e-16 S_Transcript_355068:157-633(-)
TGGGCCATCCAAGATTTTTATACACTAAGAAAGGATGTTGAAAACACCAGTAAGCGCGTAGAAGAGATTGTAGTCTCTGCTGGATTGCAACATCTAGAGGAAGAGCTTGCAACTTTGGAGTCTAAAGCAGCTGACAGCAATTTGTGGGATGACCGTGCTAAGGCACAAGAAATTCTTTCAGCTTTGACTGGTGTCAAAGACAAAATAAAACTTCTCAAAGATTTCCAAAACCAGGTGGAAGAGGCTGAAACAATAGTTAATCTCACTGAAGAGATGGATTCTATTGATACTGCGCTTCTTCAAGAGGCTGCCGGCATTATTAAGGAATTAAACAAAGCTCTTGGTCGTTTCGAATTGACACAGCTACTTTCTGGTCCTTATGATAAAGAGGGGGCTGTTATCACTATCTCAGCTGGTGCTGGTGGCACTGATGCTCAGTGCAGGATTGGGCTGACATGCTTCTCAGGATGTATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_355068.p1 GENE.S_Transcript_355068~~S_Transcript_355068.p1 ORF type:5prime_partial len:159 (-),score=44.14,PCRF|PF03462.14|1.5e-16 S_Transcript_355068:157-633(-)
WAIQDFYTLRKDVENTSKRVEEIVVSAGLQHLEEELATLESKAADSNLWDDRAKAQEILSALTGVKDKIKLLKDFQNQVEEAETIVNLTEEMDSIDTALLQEAAGIIKELNKALGRFELTQLLSGPYDKEGAVITISAGAGGTDAQCRIGLTCFSGCI*

Click here to download the sequence:
Link to NCBI Protein BLAST