Transcript Information: S_Transcript_355289.p1


Annotated TAIR IDAT5G22920.1
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:7665143-7667031 | Forward length=291
E-Value3.8E-150
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.257399139296
Replicate 215.224138919761
Replicate 321.777400541521
Condition 2: 8 Hour
Replicate 110.623349419974
Replicate 214.859530461811
Replicate 310.933220727278
Condition 3: 24 Hour
Replicate 19.1893605827592
Replicate 25.8541210713812
Replicate 38.5624652593014


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_355289.p1 GENE.S_Transcript_355289~~S_Transcript_355289.p1 ORF type:5prime_partial len:271 (-),score=42.73,zinc_ribbon_6|PF14599.2|3.3e+03,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|6.1e-24,zf-CHY|PF05495.8|3e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|2.1e+03,zf-RING_2|PF13639.2|3.4e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.5e-06,zf-RING_2|PF13639.2|14,zf-C3HC4_2|PF13923.2|7.3e+03,zf-C3HC4_2|PF13923.2|1.3e+03,zf-C3HC4_2|PF13923.2|2.4e+03,zf-C3HC4_2|PF13923.2|9.6e-06,zf-C3HC4_2|PF13923.2|31 S_Transcript_355289:842-1654(-)
CAATTGCCCTCCATCAATGGCTCAGAACAATTCTTCAAATCTTCAATTGATTTCATGGAGCTTTCAGCTGGGAATTATGGATGCAAGCACTATAGGAGAAGGTGTAAGATTAGAGCACCCTGTTGTAATGAGATATTTGATTGTAGACATTGTCATAATGAAGCCAAGAATTCTGTTGAAATTGATCCTTTGGACCGACATGATATCCCACGCCATGATATTAAAAAGGTGATATGCTCCCTCTGTGGTGAAGAACAAGATGTTCAACAGAACTGCGTCAAGTGTGGGGTTTGCATGGGGAAGTACTTTTGTGCAGTATGCAATTTCTTTGATGACGATGTTTCAAAGAAACAGTATCATTGTCATGACTGTGGAATATGCAGGACTGGAGGCGAAGAGAATTTCTTCCATTGTTCATCTTGTGGCTGCTGTTATCCAAAGACTATGAGGGGTACACATAAGTGCTTGGAGAAAGCAATGCATCATAATTGCCCAGTTTGTTGTGAGTATCTATTTGATACAACGAAGGAAGTCAGCATACTTCCTTGTGGGCATACAATGCATTTGGAATGCACTAAGCAGATGGAGCAGCACTACCGGTATGCATGTCCTATTTGCTTGAAGTCTTTGTGTGATATGTCGAAAGTCTGGAGAAAGCTAGAAGAAGAGATTGCTTCTACGCCATTGCCTGAGGTGTGCCAGAGGATGGTGCGGATTCTCTGCAATGATTGTGAGGCCAATTCCGAAGTCCAATACCATGTGTTAGCACATAAATGCCCCAACTGCAGCTCATACAACACAAAACTGATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_355289.p1 GENE.S_Transcript_355289~~S_Transcript_355289.p1 ORF type:5prime_partial len:271 (-),score=42.73,zinc_ribbon_6|PF14599.2|3.3e+03,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|6.1e-24,zf-CHY|PF05495.8|3e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|2.1e+03,zf-RING_2|PF13639.2|3.4e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.5e-06,zf-RING_2|PF13639.2|14,zf-C3HC4_2|PF13923.2|7.3e+03,zf-C3HC4_2|PF13923.2|1.3e+03,zf-C3HC4_2|PF13923.2|2.4e+03,zf-C3HC4_2|PF13923.2|9.6e-06,zf-C3HC4_2|PF13923.2|31 S_Transcript_355289:842-1654(-)
QLPSINGSEQFFKSSIDFMELSAGNYGCKHYRRRCKIRAPCCNEIFDCRHCHNEAKNSVEIDPLDRHDIPRHDIKKVICSLCGEEQDVQQNCVKCGVCMGKYFCAVCNFFDDDVSKKQYHCHDCGICRTGGEENFFHCSSCGCCYPKTMRGTHKCLEKAMHHNCPVCCEYLFDTTKEVSILPCGHTMHLECTKQMEQHYRYACPICLKSLCDMSKVWRKLEEEIASTPLPEVCQRMVRILCNDCEANSEVQYHVLAHKCPNCSSYNTKLM*

Click here to download the sequence:
Link to NCBI Protein BLAST