Transcript Information: S_Transcript_356024.p1


Annotated TAIR IDAT1G09520.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3071248-3072030 | Reverse length=260
E-Value3E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6832935134535
Replicate 22.8348835744293
Replicate 32.5242851064146
Condition 2: 8 Hour
Replicate 13.1571108570057
Replicate 23.811963036378
Replicate 32.9770736878466
Condition 3: 24 Hour
Replicate 12.9289229261132
Replicate 22.2790425048841
Replicate 32.0431265020904


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_356024.p1 GENE.S_Transcript_356024~~S_Transcript_356024.p1 ORF type:complete len:358 (-),score=51.02 S_Transcript_356024:320-1393(-)
ATGAACAGAGATCTGCCACCACCACCACAGCAACCCTCACACACCTCCACCGCCGGCACTTCCGTCGCCGCAATCGCCGCCAACGGCTGCACAAACTGCTGCTCCGACGACCGCTGGATCCTCCACTACGTAAGAATCCGAAACCTTTACCGAAAAATCTGCACATCCTGCGTTCTAAAGCTCCACCCGACGTCGTTTTGCCCTATCTGCTACAATCTCCATGATCCAAACTCTCTCACCACAATCCCTAATCCTAATTTAACAACAACGACGACGACGACGACAATCACAAACCCTAAGATCATCAAGTGCTTCAAGTGCAGTTCTTTTTCGCACACCTCTTGTCTCGCTCCTAATGGCCCTAAAACCCCTTACCTTTGCCCCCCTTGCTTCAACCCCAATTTGAAATTTTTCGACATCAAGAAACCCAAAAAGACCGAATGTTTGAACGGCGATCAAGAAGGCGGTGATCGGAAAAAGCAGGTGATTGATGAGAGGGGGTCGAAGGAGTTTTTGCTTGCGGCAAAAATATCGTCGATATCGATGAATAGGGCGGTGGTGGTGGCTAGGGCTGAGGTGGAGAAGAAGGTTAAGGAAGCTGCATTGGCTAGGAAGAGAGCTAAGGAGGCTATTGCTTATGTTACTTCGCTTTCAAATCGTATCCAGGCTGTTGGGGCTAAGCGTAGGGAGGTTGCTGAGGTGACTGTGGTGGGAGTGGCGGCGGGTGCGGGTGCCCCTCCTCCGGTTTCTAGTGCGATGGTCGGGTTGAAGAGTGGGCAGGTCATGGCTGTGAAATTGGAAACTAAGAATGGTGTTGCAAAGGTTAATGCCAATGCTAGTGGTGGTGGTGGTGTTAAAATTGAGAATAAGAACGGGCCAGTCGAGGTTGTAGGAGCGGGGGAAATGGCTCCTCCTCCGGTGGTTGCAACTGCGGTGCCGCCACATTTGCAGAACAATATAAATAATGGCATAAGTAATATCAGTACTAGTAATAATAATAGTAATCTGAATAGAGTTGGTGGTGGTAGAGGTGGAGGGAAGGAAGGTACAGGGGCGGCGGGGGTGTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_356024.p1 GENE.S_Transcript_356024~~S_Transcript_356024.p1 ORF type:complete len:358 (-),score=51.02 S_Transcript_356024:320-1393(-)
MNRDLPPPPQQPSHTSTAGTSVAAIAANGCTNCCSDDRWILHYVRIRNLYRKICTSCVLKLHPTSFCPICYNLHDPNSLTTIPNPNLTTTTTTTTITNPKIIKCFKCSSFSHTSCLAPNGPKTPYLCPPCFNPNLKFFDIKKPKKTECLNGDQEGGDRKKQVIDERGSKEFLLAAKISSISMNRAVVVARAEVEKKVKEAALARKRAKEAIAYVTSLSNRIQAVGAKRREVAEVTVVGVAAGAGAPPPVSSAMVGLKSGQVMAVKLETKNGVAKVNANASGGGGVKIENKNGPVEVVGAGEMAPPPVVATAVPPHLQNNINNGISNISTSNNNSNLNRVGGGRGGGKEGTGAAGVCK*

Click here to download the sequence:
Link to NCBI Protein BLAST