Transcript Information: S_Transcript_358111.p1


Annotated TAIR IDAT5G48930.1
Annotated Gene Namehydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Annotated Gene Symbol(s)HCT
Annotation TypeHomolog
Chromosome Positionchr5:19836654-19838092 | Reverse length=433
E-Value2E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.952117225149
Replicate 213.600349727235
Replicate 312.000410465357
Condition 2: 8 Hour
Replicate 13.0673506620534
Replicate 25.5163462399326
Replicate 34.5259676421536
Condition 3: 24 Hour
Replicate 110.922441745297
Replicate 214.902232269379
Replicate 312.438268473756


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_358111.p1 GENE.S_Transcript_358111~~S_Transcript_358111.p1 ORF type:5prime_partial len:146 (-),score=25.50,Transferase|PF02458.11|2.7e-19 S_Transcript_358111:97-534(-)
GGGAATGCCATTTTTCATGCAACTCTCACAGCAAAAGCTGGTGACGTCATAAATAAGCCTTTAGGATTTACTGCAAGTGAAGTTCACAAGGCATTGCAAAAAACGACTCATGTGGATTACTTAAGATCAGCCGTTGATTGCTTGGCAACGGTGCCTGATATTGGTGCTATAGCTCGTGGGCCCCGCACCTTTGGGTTTCCTGCCCTTTCGGTGAATACATGGGCCAGATTCCCCTTTGATGAAGTGGATTTTGGATGGGGAGGCCCTGTTTTTGGTGGCAATGGTGGCATTGGATGTGAAGGCCAATGTTTCATCCTACAAAGCCCTAATTCTGATGGTAGCTTGTTGGTCGCTGCTAAACTCTTTGCTCAACACATGACTTTATTTCAAAAGTATCTATATGAGCCCCGCTCTCTTTCTCTATCATCTTCTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_358111.p1 GENE.S_Transcript_358111~~S_Transcript_358111.p1 ORF type:5prime_partial len:146 (-),score=25.50,Transferase|PF02458.11|2.7e-19 S_Transcript_358111:97-534(-)
GNAIFHATLTAKAGDVINKPLGFTASEVHKALQKTTHVDYLRSAVDCLATVPDIGAIARGPRTFGFPALSVNTWARFPFDEVDFGWGGPVFGGNGGIGCEGQCFILQSPNSDGSLLVAAKLFAQHMTLFQKYLYEPRSLSLSSSL*

Click here to download the sequence:
Link to NCBI Protein BLAST