Transcript Information: S_Transcript_359214.p1


Annotated TAIR IDAT5G52290.1
Annotated Gene Nameshortage in chiasmata 1
Annotated Gene Symbol(s)SHOC1
Annotation TypeOrtholog
Chromosome Positionchr5:21230353-21236554 | Reverse length=1594
E-Value6.6E-121
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.32977696697869
Replicate 20.24605341513957
Replicate 30.091413809584142
Condition 2: 8 Hour
Replicate 10.23782963178959
Replicate 20.24950017070327
Replicate 30.21130951776933
Condition 3: 24 Hour
Replicate 10.21655398751518
Replicate 20.22467223371844
Replicate 30.12501632914556


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_359214.p1 GENE.S_Transcript_359214~~S_Transcript_359214.p1 ORF type:internal len:807 (+),score=139.99 S_Transcript_359214:1-2418(+)
CTAAAATCAAGGTTATGCTTTCTTCATTCCTTGATAGAGGATGCTTGGGCCATAGTAAACAAGGACATAACCAAGTCCCATCCATCACTAGTTGTCATCAAAGGAATTTTGCAACAGAATGCGAGAAGGAAAAACAAAGTATTGATCTTGGCTCTTCAATGTTTATGGGAACCACTGAAAAGGTTGTTAAATTCCATGGATATATCCTTCACAGAAGTTCAAGTACCTTCTATACATGACAATCAGTCAGACATGTTTTATGACTTACTTGATGCCAGAGCAACAGATCAACTGCAGACAGTTTGCATGTTATTCCCACAGGAGGATGTTTCTCCTCCTATTCTCAAGCAAAATTTTGACATTATCTTAGAGTATGGAGGTCATAGTGGCTTATCAAAAGTGTCAACACTTTATCGTGAATATATTGGATCTCGGACTCTTCATCTTTTGAAGGTGGAGCTAGATGGTGTTGCTAAAGCACTCTGTGAAGGTGTCAATGTTACTTCAAATGACAGAGGTGCAATTAAGTTGGAAGACATGTTAAAATTTGCCCCCTTCACAGCGAAATGCACTTTGTTATCTTCTGAAGCTGCAAGCAGGGCAAATCCTTCGATTATGACTAGTCCTGTTTGTTACATGGTTCAAGAGTCTAATCCAATTCATTCCAGTGACTCATCCATTCCAGATCTAATCATCGTTTGTAACACTCAAGAATTTGATAAGGAGATGATAATATCCCGGAGAAGCACATATCAAAAGATCCTTAACATCGAGAAGAGGGGAGGGCAAGTCGTAGAACGAGATCTCAATCTTCCTGTAGATATAGTAGTTGACACTACAAAGTGTGTAGCATGGTATCACTGCAACAATATTGGACTGCAAGCTACTGATCAAGATGAGGTCTCTTCAAGCATTCCTCTTTGCATTGAGAATATAGCAGCGAATGTCTTGACATCTTTGAGCTTCTCATTCACTACTTGTGTTCTGATTTTTGAAGGAGAAAGCAACTTTCTTGGTACTGTAATGGAGTCAGCAGATGAACTATATGCTGCAGCAGCCAGTCTGGGTATTAATGTCCAGATCTTCTGTTCCTATTCATTTGAGCTGACCGATGAGATTATTTTGGGTACTATTGGAAATGCCATGAAGTTCTCTAAATCCTTACTACCCAGACTTCCTGAGTCAGAGACGCTTGCTGAATCACTCCTTACCAAGTTTCCTTCTATTAATCCATTAGCAGCACATGCAATTATTTCAAGCCGAAGCGTGCTTCTAGAGTTCCTTGGGTGGTCAGTTGAGGACATGATCAATGTACTTGGAAAATATCGTGTCCCTGAGGAAAGTATCAATCTTTTTAGTGTCTTGTGCAAATATGGGGAGCGGGAGGAATCCAAGTCTGGGGTGACGGATTGTTGTTCCTCAGTAGATTCTCCTCCTGAATCTGGAAATTTTGGCCGCAAAGTCAACTCAGAAGATAGAAAACGAAAATTTTTTCCAAGTTCTGATGATGCTATGTGTGACTTCGGATGTTCTAAGCGATCTGGTAAATATATGGATCATGAATTGAATTTCCAGATTGTCTCAAGGCCATTAAATCAAACGGTGTCAAAAAGTCCAAGCCTAAATCAAGAAGAGAAACTGCCTGGCTTGTTGGATGAACTGTTTGGTCAAGGAGATGTACCAGATGCTGCTCCAAATACTGGTCCTTCTAAAACCTTGTTTAAACGAAACAGTCCTTGGGCACCTACAATTCTCCAAATGGGGGATGACTTTGCCCAATCTGCCTTGTTTGCAAATGATCAATCTTTCGACCATCAGAAATCTGGTGTGGCCAATAAAAACATCCAAAAAGAGTATGATGGCATACTTGATTTGCGTGAAGATTTTAGAGGTGAAGTTGTCAACATCCCTGACGAGCCCTTAGGAGTTGGGGACGTACACGCTGCTGGAGAAGCTACAAAGTACTCTCCGTTTGTAGATGAGGTGGTACATGATCATGCTCTGAAAAACAATAGAACTGCCAGAAGATTATCATTTGGTAGCAGCTCCTATCGTAACTTTGCAACGGCTGATGAGATGAATACTAAGTGCGGGCTTGAAGATGGGAGGCAGGAGGACTATTATGTCCTTGGCCACAACTGGAACAAAAGTGAGTTCATGCCCCAGAAGGAGCCAATAGGGGTAAGTTTCATGGAGAATACCCAAAAATTCAATCTCCCATTTTCAAAAGAGAAGGAATTTTCCCCTTATGGTGAAACTCCACTCTCAAGGGCAATTAGTTCAACGCAAGTGAAACAAGGGTCACCCTGGACAATCGAGTTCCTGAACCGGATCAAGGAAAAGAGGAAGTTACGTCAGCAGCATCAGCATTGTTACCCCTTGGCTCCTCAATGTAGCTCTCATGGGAATATCAACAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_359214.p1 GENE.S_Transcript_359214~~S_Transcript_359214.p1 ORF type:internal len:807 (+),score=139.99 S_Transcript_359214:1-2418(+)
LKSRLCFLHSLIEDAWAIVNKDITKSHPSLVVIKGILQQNARRKNKVLILALQCLWEPLKRLLNSMDISFTEVQVPSIHDNQSDMFYDLLDARATDQLQTVCMLFPQEDVSPPILKQNFDIILEYGGHSGLSKVSTLYREYIGSRTLHLLKVELDGVAKALCEGVNVTSNDRGAIKLEDMLKFAPFTAKCTLLSSEAASRANPSIMTSPVCYMVQESNPIHSSDSSIPDLIIVCNTQEFDKEMIISRRSTYQKILNIEKRGGQVVERDLNLPVDIVVDTTKCVAWYHCNNIGLQATDQDEVSSSIPLCIENIAANVLTSLSFSFTTCVLIFEGESNFLGTVMESADELYAAAASLGINVQIFCSYSFELTDEIILGTIGNAMKFSKSLLPRLPESETLAESLLTKFPSINPLAAHAIISSRSVLLEFLGWSVEDMINVLGKYRVPEESINLFSVLCKYGEREESKSGVTDCCSSVDSPPESGNFGRKVNSEDRKRKFFPSSDDAMCDFGCSKRSGKYMDHELNFQIVSRPLNQTVSKSPSLNQEEKLPGLLDELFGQGDVPDAAPNTGPSKTLFKRNSPWAPTILQMGDDFAQSALFANDQSFDHQKSGVANKNIQKEYDGILDLREDFRGEVVNIPDEPLGVGDVHAAGEATKYSPFVDEVVHDHALKNNRTARRLSFGSSSYRNFATADEMNTKCGLEDGRQEDYYVLGHNWNKSEFMPQKEPIGVSFMENTQKFNLPFSKEKEFSPYGETPLSRAISSTQVKQGSPWTIEFLNRIKEKRKLRQQHQHCYPLAPQCSSHGNINN

Click here to download the sequence:
Link to NCBI Protein BLAST