Transcript Information: S_Transcript_359215.p2


Annotated TAIR IDAT5G52290.1
Annotated Gene Nameshortage in chiasmata 1
Annotated Gene Symbol(s)SHOC1
Annotation TypeHomolog
Chromosome Positionchr5:21230353-21236554 | Reverse length=1594
E-Value6E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.92836050820397
Replicate 20.51308812924453
Replicate 30.21445041957675
Condition 2: 8 Hour
Replicate 10
Replicate 20.26013777488054
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_359215.p2 GENE.S_Transcript_359215~~S_Transcript_359215.p2 ORF type:5prime_partial len:86 (+),score=14.67 S_Transcript_359215:2-259(+)
CCTAAGAGAAAAAGTCCATCCATTCTTGAATATTATAGGTACCAGGGTGGCAGCACTCCCAGGAAGGTGACAGAACAGAAAAGGCACAAGCAACATGCTCAACCAGTGAATGAGAAATCTTCAAGATTTCTCCCAACGTGGACTCCAACTGATAAGAAAGCTAAACGGACTCTATCTTTTGCATCGAGTGGAACTGGACAAAGTAAGCTTATTTGGAGAGACAATAACCCTTCCGGTGACAGCAGATTTTCAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_359215.p2 GENE.S_Transcript_359215~~S_Transcript_359215.p2 ORF type:5prime_partial len:86 (+),score=14.67 S_Transcript_359215:2-259(+)
PKRKSPSILEYYRYQGGSTPRKVTEQKRHKQHAQPVNEKSSRFLPTWTPTDKKAKRTLSFASSGTGQSKLIWRDNNPSGDSRFST*

Click here to download the sequence:
Link to NCBI Protein BLAST