Transcript Information: S_Transcript_35959.p1


Annotated TAIR IDAT5G23120.1
Annotated Gene Namephotosystem II stability/assembly factor, chloroplast (HCF136)
Annotated Gene Symbol(s)HCF136
Annotation TypeOrtholog
Chromosome Positionchr5:7778154-7780463 | Forward length=403
E-Value1.1E-231
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1190.66030735652
Replicate 2210.4746217738
Replicate 3244.48094674007
Condition 2: 8 Hour
Replicate 1237.39084992331
Replicate 2262.78574446963
Replicate 3264.43316419413
Condition 3: 24 Hour
Replicate 1190.57215522765
Replicate 2206.73680858325
Replicate 3209.11709950809


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_35959.p1 GENE.S_Transcript_35959~~S_Transcript_35959.p1 ORF type:complete len:402 (+),score=76.85,PSII_BNR|PF14870.2|1.1e-124,Sortilin-Vps10|PF15902.1|0.02,Sortilin-Vps10|PF15902.1|0.002,Sortilin-Vps10|PF15902.1|22,BNR|PF02012.16|3,BNR|PF02012.16|1.8,BNR|PF02012.16|34,BNR|PF02012.16|3.4 S_Transcript_35959:77-1282(+)
ATGGCTACTACAGCACTGAAGCTTCCAGAATGCTCCTTCCACTCTATTTCCTCTTCTCATCATCCTCAACGACGACGTCGTCGTGTGTCGCTGAAGGCTTGCGCAGCTCCACAGCCGTCGCAACAGCCGCCGGTACTGGTCGCCGACCGTCGGAGATTCCTCGCGCATTCATTGTCACTGTCGTTGTCTCTCTCTCCTCTCGTCGGTTTCTCTGAAGCTGCGAAATCGGAAGATTTGCTCTCCGAATGGGAGCGAGTTTACCTGCCTATTGATCCTGGCGTTGTTCTCCTTGATATCGCCTTCGTTCCTGATGATCCTAAACACGGTTTTGTTTTAGGGACAAGGCAAACTATTTTAGAGACCAAGGATGGTGGAGAAACATGGGTTCCACGCACTATAGCGTCAGCCGAAGAAGAGGATTTCAACTACAGATTTAACTCCATAAGCTTCAAAGGAAAGGAAGGTTGGATAGTTGGGAAGCCTGCAATTCTGTTGTACACCTCTGATGCTGGAGAAAACTGGAAGAGGATACCTTTGAGTGCTCAACTTCCAGGAGATATGGTGTATATAAAGGCAACTGAAGAAAAGAGTGCAGAGATGGTTACTGATGAAGGTGCAATATACAACACTTCAAATGGAGGTTATAATTGGAAGGCTGCTGTTCAGGAGTCTGTTTCAGCCACTCTTAACAGAACAGTCTCTAGTGGTATTAGTGGTGCAAGTTACTACACAGGTACCTTCAATTCTGTGAATCGTTCCCCAGATGGACGATATGTTGCTGTTTCAAGCCGTGGCAACTTTTATCTAACTTGGGAGCCTGGCCAGGCCTACTGGCAGCCACATAACCGAGCAATTGCAAGAAGAATCCAAAACATGGGATGGAGAGCTGATGGAGGCCTTTGGTTGCTTGTACGTGGCGGTGGACTATATTTAAGCAAAGGCACTGGGATAACGGAGGAGTTTGAAGAAGTGCCAGTGCAAAGTCGTGGATTTGGCATTCTTGACATAGGATATCGCTCACAGGATGAAGCTTGGGCAGCTGGAGGCAGCGGTGTACTATTGAGAACAACCAATGGTGGCAAGACATGGATACGTGACAAAGCAGCTGATAATATAGCTGCAAATCTTTATTCTGTCAAGTTTATCGATGAGAAAAAGGGGTTTGTGCTTGGAAACGATGGAGTTTTGCTTCGGTACCTTGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_35959.p1 GENE.S_Transcript_35959~~S_Transcript_35959.p1 ORF type:complete len:402 (+),score=76.85,PSII_BNR|PF14870.2|1.1e-124,Sortilin-Vps10|PF15902.1|0.02,Sortilin-Vps10|PF15902.1|0.002,Sortilin-Vps10|PF15902.1|22,BNR|PF02012.16|3,BNR|PF02012.16|1.8,BNR|PF02012.16|34,BNR|PF02012.16|3.4 S_Transcript_35959:77-1282(+)
MATTALKLPECSFHSISSSHHPQRRRRRVSLKACAAPQPSQQPPVLVADRRRFLAHSLSLSLSLSPLVGFSEAAKSEDLLSEWERVYLPIDPGVVLLDIAFVPDDPKHGFVLGTRQTILETKDGGETWVPRTIASAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGENWKRIPLSAQLPGDMVYIKATEEKSAEMVTDEGAIYNTSNGGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNSVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDIGYRSQDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVLLRYLG*

Click here to download the sequence:
Link to NCBI Protein BLAST