Transcript Information: S_Transcript_35960.p1


Annotated TAIR IDAT5G23120.1
Annotated Gene Namephotosystem II stability/assembly factor, chloroplast (HCF136)
Annotated Gene Symbol(s)HCF136
Annotation TypeOrtholog
Chromosome Positionchr5:7778154-7780463 | Forward length=403
E-Value6.1E-212
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.1944054599127
Replicate 27.2274655447031
Replicate 35.6176150139703
Condition 2: 8 Hour
Replicate 17.3535828679769
Replicate 28.4215867005867
Replicate 37.3502922775798
Condition 3: 24 Hour
Replicate 15.3356755652313
Replicate 24.0378055107286
Replicate 37.3926681877064


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_35960.p1 GENE.S_Transcript_35960~~S_Transcript_35960.p1 ORF type:5prime_partial len:348 (+),score=65.48,PSII_BNR|PF14870.2|1.9e-114,Sortilin-Vps10|PF15902.1|0.015,Sortilin-Vps10|PF15902.1|0.0015,Sortilin-Vps10|PF15902.1|2.2e+02,BNR|PF02012.16|2.5,BNR|PF02012.16|1.5,BNR|PF02012.16|28,BNR|PF02012.16|2.8 S_Transcript_35960:1-1044(+)
CTGTCGTTGTCTCTCTCTCCTCTCGTCGGTTTCTCTGAAGCTGCGAAATCGGAAGATTTGCTCTCCGAATGGGAGCGAGTTTACCTGCCTATTGATCCTGGCGTTGTTCTCCTTGATATCGCCTTCGTTCCTGATGATCCTAAACACGGTTTTGTTTTAGGGACAAGGCAAACTATTTTAGAGACCAAGGATGGTGGAGAAACATGGGTTCCACGCACTATAGCGTCAGCCGAAGAAGAGGATTTCAACTACAGATTTAACTCCATAAGCTTCAAAGGAAAGGAAGGTTGGATAGTTGGGAAGCCTGCAATTCTGTTGTACACCTCTGATGCTGGAGAAAACTGGAAGAGGATACCTTTGAGTGCTCAACTTCCAGGAGATATGGTGTATATAAAGGCAACTGAAGAAAAGAGTGCAGAGATGGTTACTGATGAAGGTGCAATATACAACACTTCAAATGGAGGTTATAATTGGAAGGCTGCTGTTCAGGAGTCTGTTTCAGCCACTCTTAACAGAACAGTCTCTAGTGGTATTAGTGGTGCAAGTTACTACACAGGTACCTTCAATTCTGTGAATCGTTCCCCAGATGGACGATATGTTGCTGTTTCAAGCCGTGGCAACTTTTATCTAACTTGGGAGCCTGGCCAGGCCTACTGGCAGCCACATAACCGAGCAATTGCAAGAAGAATCCAAAACATGGGATGGAGAGCTGATGGAGGCCTTTGGTTGCTTGTACGTGGCGGTGGACTATATTTAAGCAAAGGCACTGGGATAACGGAGGAGTTTGAAGAAGTGCCAGTGCAAAGTCGTGGATTTGGCATTCTTGACATAGGATATCGCTCACAGGATGAAGCTTGGGCAGCTGGAGGCAGCGGTGTACTATTGAGAACAACCAATGGTGGCAAGACATGGATACGTGACAAAGCAGCTGATAATATAGCTGCAAATCTTTATTCTGTCAAGTGCGCAATTATTCGGATTGGGTTGCATTTTTGTTCGGGTTGTATATACATAGGTTTGAAAATGCCTGACCCCAACACCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_35960.p1 GENE.S_Transcript_35960~~S_Transcript_35960.p1 ORF type:5prime_partial len:348 (+),score=65.48,PSII_BNR|PF14870.2|1.9e-114,Sortilin-Vps10|PF15902.1|0.015,Sortilin-Vps10|PF15902.1|0.0015,Sortilin-Vps10|PF15902.1|2.2e+02,BNR|PF02012.16|2.5,BNR|PF02012.16|1.5,BNR|PF02012.16|28,BNR|PF02012.16|2.8 S_Transcript_35960:1-1044(+)
LSLSLSPLVGFSEAAKSEDLLSEWERVYLPIDPGVVLLDIAFVPDDPKHGFVLGTRQTILETKDGGETWVPRTIASAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGENWKRIPLSAQLPGDMVYIKATEEKSAEMVTDEGAIYNTSNGGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNSVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDIGYRSQDEAWAAGGSGVLLRTTNGGKTWIRDKAADNIAANLYSVKCAIIRIGLHFCSGCIYIGLKMPDPNT*

Click here to download the sequence:
Link to NCBI Protein BLAST