Transcript Information: S_Transcript_362289.p1


Annotated TAIR IDAT1G09880.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3208828-3211653 | Reverse length=631
E-Value2E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.1355806884749
Replicate 22.4006144078125
Replicate 30
Condition 2: 8 Hour
Replicate 11.4364252545219
Replicate 20.11591631419548
Replicate 34.1969026372502
Condition 3: 24 Hour
Replicate 10.22637184964346
Replicate 20.35228722657535
Replicate 31.8295783506302


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_362289.p1 GENE.S_Transcript_362289~~S_Transcript_362289.p1 ORF type:complete len:193 (+),score=21.42,CBM-like|PF14683.2|6.4e-10 S_Transcript_362289:590-1168(+)
ATGATGTTCTTTTCTGATGATTATTTAGGCGGCCAAATGTATATGGAGTTCGATTTGGAAGAGCAATGGAAGAAAGTATTTGGACCATATTTTGTTCATTTGAACACTGCTGAAGATCCCACTACCGCATGGGAGAAAGCAAAAAATCAGTTGTCTGAAGAAATTCAGAAATGGCCTTATGTCTTTGATCCCAAGTTTACTCAGACAACAACAATTAAGGGGCGATTGTTCATTAAAGATAGGTATCTAAGCCAAACCCCATTTCCAGCACGCTTTGCTTGGGTTGGTTTATACAAAGGGTATAACCGCGCCGAGTGGGAAATAGAAGGCAAGTTGAGGATTAATGACCCAGACATTAGACACATGCCGTACCTCTCTACTGGGATATCATGGGAGGATAAAGCCTTCCTAAGGGTCGGAATTCACGGGGCTTACAATGTTTATACTATTCCCATAATCAGTGAAAGGCTGAATACTGGTAACAATTCCTTCTACCTCACCCAAGCAATAACTGAGAATCCTTTCTGTGGAGTGTTGTATGACTACCTGCGTCTTGAAGGTCCCCAACCCATTGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_362289.p1 GENE.S_Transcript_362289~~S_Transcript_362289.p1 ORF type:complete len:193 (+),score=21.42,CBM-like|PF14683.2|6.4e-10 S_Transcript_362289:590-1168(+)
MMFFSDDYLGGQMYMEFDLEEQWKKVFGPYFVHLNTAEDPTTAWEKAKNQLSEEIQKWPYVFDPKFTQTTTIKGRLFIKDRYLSQTPFPARFAWVGLYKGYNRAEWEIEGKLRINDPDIRHMPYLSTGISWEDKAFLRVGIHGAYNVYTIPIISERLNTGNNSFYLTQAITENPFCGVLYDYLRLEGPQPIG*

Click here to download the sequence:
Link to NCBI Protein BLAST