Transcript Information: S_Transcript_362357.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value5E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4851176295115
Replicate 25.85420589342
Replicate 36.1586754069785
Condition 2: 8 Hour
Replicate 15.2736073527928
Replicate 26.0573597399982
Replicate 34.1939122544097
Condition 3: 24 Hour
Replicate 15.6386612620126
Replicate 24.4182159751724
Replicate 34.8714056883528


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_362357.p1 GENE.S_Transcript_362357~~S_Transcript_362357.p1 ORF type:complete len:554 (-),score=147.35 S_Transcript_362357:1120-2781(-)
ATGAAGTTGTTTTCTGAACTGCACATCGTGATGATTATTACTGTTGTTGCCAGTACAAATGATACAGCTGCAGCTAAAGCAAATGGACCTGCTGAATTTGATAAGAAGAGCACTCAGGAGCTTGTGAATGTATTTAAGAAACCAGAAGATGCTCCTACTCCTGTCTCTAGCACAGCTAAAGGCATATTCAACTTTGGATTGCCTGCCAATAATGCCATTCCTACAATCGGATCATTGAGTACAGTTTCTACAACAACTGTTGCATCATCCCCAGTTTTGTTTTCGAGTACCTCAAGCAATCAGAGTTCACTTCTGGTCACTTCTTCAGTGCCATCTTTTCCATTCTCAGATAATTCCAGTTTATCTAATGGCTTTGCATCATCTAGCGCATCCTCCACTAATGCTGTATCCATGGGGAGCACTGGTACTGAGAACAGCACGTCCCCTTTTTCTGTTAGCAGTAGCCTACAGTTCGGCTCAATGACAGCACCATTAGTTTCACCTGGACCTTCTTTTCTGTTTGGATCTTCTTCAGTAACATCAACTACTACAACAATAGGTGCTTCTGCTTCAAAATCTACAGAGAGTTCAGCAGCCAAGTTAAATGAGACTGCTTTTGGCAGCACAACTAGCAGTCTTTTTGGCACCAAATCTTCTGTAACTGTCAATGGAGGAAATGATGTTTCTGGTTTGAATGCTTCTACCTTAAAATCTGCCAGTTGTGAGGCTCCAATAGCTGCTCCTGCTGCTAGCAATGGATCTATCTTCGGTTTTCAAGCATCATCATCTAGTGCTCCAGTCTCAACCTCAACTCAGAGTTTCCCTAGTCCATTTCCTTCGCAAGCGTCATCTCCTATTTTCGGGTTGGGTACAACCACTGCCACTAACACTTTTAGCTCAAGCACTGCTTCAGCATCAACTTTGGGTGCCTCTTCGAGTTCATCTGTCAGCTCGAGCAGTGGTATTGCCTCCAGCATATTTGGCTCCAGTTGGCAGCCTTCAAAACCCACCAACACGAGTACCACATTTGGCTCGACGCCAGCATCAACTGGATTTTCGTTTGGAGCGACAGTCTCTGGGCCTTCAGTAGATAATAATAAGGCTCCTTCCGTTGTGTTTGGATCATCGACCCCAAGCTCTTCAGCAGCTGGTAACAGTGCAGGATTTGTGTTTGGAGCTGCCAGCTCATCAGCAGCTCCCATTTTCTCATTCTCCTCAGCTTCTTCAACTGCTCCTCCCTCTGCATCTCAGCCTGCATTTGGTAACACTAGCACTCCAGCATTTGCGTTTGGTTCATCTCCCTCGGGAAATAATGATCAGATGAGCATGGAAGATAGCATGGCAGAGGATTCTGTTCAGGGTTCGACACCTGCTGCTCCAGTGTTTGGTCAATCGCCAATTTCAGCACCTTCACCGGGCTTTATGTTTGGTGCAACGCCTTCACCTGGTTTTGGCAGTACAGCTGCTCCACCAACAGCAAATTCATTTCAGTTTGGTAGCCAGCCTTCTCCAATGGCTCCTCAGAGCCCTTCTCCATTTCAGCCTTCTAGTAGTGTGGAATTTAATGCCAGTGGGGCTGGGAGCTTTTCTTTGGGGACTGGTGGTGGTGACAAATCAAATCGTAAAATAGTGAAGGTGAAGGGCAGATTACGAAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_362357.p1 GENE.S_Transcript_362357~~S_Transcript_362357.p1 ORF type:complete len:554 (-),score=147.35 S_Transcript_362357:1120-2781(-)
MKLFSELHIVMIITVVASTNDTAAAKANGPAEFDKKSTQELVNVFKKPEDAPTPVSSTAKGIFNFGLPANNAIPTIGSLSTVSTTTVASSPVLFSSTSSNQSSLLVTSSVPSFPFSDNSSLSNGFASSSASSTNAVSMGSTGTENSTSPFSVSSSLQFGSMTAPLVSPGPSFLFGSSSVTSTTTTIGASASKSTESSAAKLNETAFGSTTSSLFGTKSSVTVNGGNDVSGLNASTLKSASCEAPIAAPAASNGSIFGFQASSSSAPVSTSTQSFPSPFPSQASSPIFGLGTTTATNTFSSSTASASTLGASSSSSVSSSSGIASSIFGSSWQPSKPTNTSTTFGSTPASTGFSFGATVSGPSVDNNKAPSVVFGSSTPSSSAAGNSAGFVFGAASSSAAPIFSFSSASSTAPPSASQPAFGNTSTPAFAFGSSPSGNNDQMSMEDSMAEDSVQGSTPAAPVFGQSPISAPSPGFMFGATPSPGFGSTAAPPTANSFQFGSQPSPMAPQSPSPFQPSSSVEFNASGAGSFSLGTGGGDKSNRKIVKVKGRLRRK*

Click here to download the sequence:
Link to NCBI Protein BLAST