Transcript Information: S_Transcript_36413.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value2.8E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.134350133828
Replicate 218.412112148717
Replicate 323.219272047699
Condition 2: 8 Hour
Replicate 124.700631950061
Replicate 229.695007726831
Replicate 323.922821772497
Condition 3: 24 Hour
Replicate 118.858892222096
Replicate 223.397532095006
Replicate 322.046607159868


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_36413.p1 GENE.S_Transcript_36413~~S_Transcript_36413.p1 ORF type:5prime_partial len:278 (-),score=80.99,RRM_1|PF00076.18|4.6e+02,RRM_1|PF00076.18|1.1e-18,RRM_1|PF00076.18|0.02,RRM_5|PF13893.2|5.3e+03,RRM_5|PF13893.2|0.037,RRM_5|PF13893.2|0.28,RRM_6|PF14259.2|1.5e-05,RRM_6|PF14259.2|7.7e+02 S_Transcript_36413:350-1183(-)
GAGGAGGCTAGCAATGCTATGGCATTGGATGGCATTATATTTGAGGGCACACCTGTCAAGGTGAGACGGCCTAGTGATTACAATCCATCCCTTGCTGCAACACTTGGTCCCAGCCAACCCAATCCAAATCTGAACCTTGCTGCTGTTGGGTTAACTCCTGGATCAGCTGGTGGACTTGAGGGCCCTGATCGTATTTTTGTAGGTGGGCTACCGTATTATTTCACTGAAGCGCAGATCCGGGAGCTACTTGAATCTTTTGGGCCCCTTCGGGGATTTGATCTTGTGAAGGATAGAGAGACTGGAAACTCCAAAGGCTATGCCTTTTGTGTTTACCAAGATCCCTCTGTAACTGATGTAGCTTGTGCTGCTCTGAATGGAATTAAAATGGGTGATAAAACACTCACTGTCAGACGTGCTAATCAGGGAGCTGCGCAACCTAAGCCTGAGCAAGAGATTGTTCTACAACATGCACAACAACAAATAATGCTGCAGAAGCTCATGTTTCAACCTGGAGCACTTCCCACCAAGGTTGTGTGCTTAACACAAGTGGTTACTGCTGATGATCTTAGAGATGATGATGAGTATCAAGACATAATGGTTGACATGAAAGAGGAGGGTGAGAAATTTGGTTCTTTGATTAAGGTTGTTATCCCACGGCCAGGACCCAATGGAGAACTTGCGCTTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATACAGATGGTTCTTCAAGAGCTCGAGCTGGAATGAATGGTAGGAAATTTGGTGGGAACCAAGTTGTGGCCGTGTTCTACCCTGAAAATAAATTTGCGGAGGCAGACTATGATGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_36413.p1 GENE.S_Transcript_36413~~S_Transcript_36413.p1 ORF type:5prime_partial len:278 (-),score=80.99,RRM_1|PF00076.18|4.6e+02,RRM_1|PF00076.18|1.1e-18,RRM_1|PF00076.18|0.02,RRM_5|PF13893.2|5.3e+03,RRM_5|PF13893.2|0.037,RRM_5|PF13893.2|0.28,RRM_6|PF14259.2|1.5e-05,RRM_6|PF14259.2|7.7e+02 S_Transcript_36413:350-1183(-)
EEASNAMALDGIIFEGTPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDPSVTDVACAALNGIKMGDKTLTVRRANQGAAQPKPEQEIVLQHAQQQIMLQKLMFQPGALPTKVVCLTQVVTADDLRDDDEYQDIMVDMKEEGEKFGSLIKVVIPRPGPNGELALGVGKVFLEYADTDGSSRARAGMNGRKFGGNQVVAVFYPENKFAEADYDG*

Click here to download the sequence:
Link to NCBI Protein BLAST