Transcript Information: S_Transcript_364860.p1


Annotated TAIR IDAT3G08940.2
Annotated Gene Namelight harvesting complex photosystem II
Annotated Gene Symbol(s)LHCB4.2
Annotation TypeOrtholog
Chromosome Positionchr3:2717717-2718665 | Forward length=287
E-Value8.6E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1251.25402704599
Replicate 2294.39681245463
Replicate 3351.16861065851
Condition 2: 8 Hour
Replicate 1192.14723480617
Replicate 2177.48333254183
Replicate 3161.89112975886
Condition 3: 24 Hour
Replicate 1413.26038562462
Replicate 2338.67870222295
Replicate 3336.29392540155


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_364860.p1 GENE.S_Transcript_364860~~S_Transcript_364860.p1 ORF type:complete len:195 (-),score=30.23,Chloroa_b-bind|PF00504.17|2.2e+03,Chloroa_b-bind|PF00504.17|5e-17 S_Transcript_364860:13-543(-)
ATGGATCAAACCCCTTTACACCAACCCAATAGAACAACACCCATCCACCAAATTCTAGCCATGGCCTCGGCCACCGCCACTGCCGCCACATCATCATTTATCGGTACCCGCCTCACAGATATACCATCCAACTCGGGCCGGGTGATGGCCCGGTTTGGGTTTGGAACCAAGAAGGTAGCCCCTAAGAAGGCACCATCTAAGTCCAGCTCGGGCTCGGATCGGCCTTTGTGGTACCCTGGGGCCAAGGCCCCAGAGTGGTTAGATGGGAACCTGGTGGGTGACTATGGGTTTGATCCCTTTGGGCTTGGCAAGCCTGCTGAGTATTTACAATACGACTATGACTCATTGGACCAGAACTTGGCCAAGAACGTGGCTGGTGATGTTATTGGGACCCGGATCGAGAGCTCGGATGTCAAGTCCACAGCCCTTCAGCCCTACAGTGAAGTGTTTGGGCTTCAGAGGTTTAGAGAGTGTGAGCTGATCCATGGTAGATGGGCTATGTTTGCCACTCTTGGTGCCTTGACTGTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_364860.p1 GENE.S_Transcript_364860~~S_Transcript_364860.p1 ORF type:complete len:195 (-),score=30.23,Chloroa_b-bind|PF00504.17|2.2e+03,Chloroa_b-bind|PF00504.17|5e-17 S_Transcript_364860:13-543(-)
MDQTPLHQPNRTTPIHQILAMASATATAATSSFIGTRLTDIPSNSGRVMARFGFGTKKVAPKKAPSKSSSGSDRPLWYPGAKAPEWLDGNLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNVAGDVIGTRIESSDVKSTALQPYSEVFGLQRFRECELIHGRWAMFATLGALTV*

Click here to download the sequence:
Link to NCBI Protein BLAST