Transcript Information: S_Transcript_365159.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87873117285973
Replicate 20.83255809650999
Replicate 30.52196422878115
Condition 2: 8 Hour
Replicate 10.40236585504025
Replicate 20.42211035169296
Replicate 30.70382515676825
Condition 3: 24 Hour
Replicate 10.61825141954512
Replicate 20.21380954317309
Replicate 30.95177526057042


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_365159.p1 GENE.S_Transcript_365159~~S_Transcript_365159.p1 ORF type:complete len:212 (+),score=36.17 S_Transcript_365159:103-738(+)
ATGGTATCAGAGCAGATTTATCCTGATATTTCTGATTGTAAACAGAAAACTGGAGAATCAATTATTGACTACTATGGTCGTTTGAAGAAATTATGGGATGACGTCAACGACTATGATGCGTTGCCTTCTTGCTCATGTAATGGTTGTAAGTTCGGCCTTAATGCAAAGCTCCGTCAACGACGTGCCACTAATCAGGTTCGTGAGTTTCTGATGGGTCTTGAATCTTTTTATGCTAATGTTCGCTCAAGTATTTTAGGGGTCGAGCCTCTGCCTTCTCTTCATTCTGTCTATTCTCGGCTTGTTCAAGAGGAGGAGATGCGCCTCTTGACTGAACGTCGTGCCGCAGAGCCAACTTCCATGGCCTTCGCTGTCAAAGGACCTATGTCACAGGGTTCGAATAATGGGGGGGGGGCTGGTCGTCCTCCGATGAAGTGTACTCATTGTGGTAAGCTTTGGCACCTCGAAGAAAATTGTTGGCAAAAGCACGGGTACCCGGAAGGCAAGGAGCGCAAAGGGCCTAGTGGTCGTGGAAAAGGTGGCTCGGGGTCTTCCAATACTGCTCCTCCACCTAAGGCTAATGCTGTCTTTGGTGAGGCCTCAACATCTACTAACCATGTTTGCTTAAACGGACCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_365159.p1 GENE.S_Transcript_365159~~S_Transcript_365159.p1 ORF type:complete len:212 (+),score=36.17 S_Transcript_365159:103-738(+)
MVSEQIYPDISDCKQKTGESIIDYYGRLKKLWDDVNDYDALPSCSCNGCKFGLNAKLRQRRATNQVREFLMGLESFYANVRSSILGVEPLPSLHSVYSRLVQEEEMRLLTERRAAEPTSMAFAVKGPMSQGSNNGGGAGRPPMKCTHCGKLWHLEENCWQKHGYPEGKERKGPSGRGKGGSGSSNTAPPPKANAVFGEASTSTNHVCLNGP*

Click here to download the sequence:
Link to NCBI Protein BLAST