Transcript Information: S_Transcript_365348.p1


Annotated TAIR IDAT4G15093.1
Annotated Gene Namecatalytic LigB subunit of aromatic ring-opening dioxygenase family
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:8618454-8619472 | Forward length=269
E-Value5E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.135239051215
Replicate 223.280046912412
Replicate 310.429685233485
Condition 2: 8 Hour
Replicate 18.7507636128925
Replicate 27.6372862597687
Replicate 315.656122551245
Condition 3: 24 Hour
Replicate 113.709547569959
Replicate 222.273056204341
Replicate 319.655800122608


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_365348.p1 GENE.S_Transcript_365348~~S_Transcript_365348.p1 ORF type:5prime_partial len:290 (-),score=59.11,LigB|PF02900.14|1.1e-49 S_Transcript_365348:108-977(-)
CCCCCCAAAAAAAAAAAAAAGAAAAGAAAAAAAAGGATCATGACATTAGGCAAAAAGATGAGTGAGAAAGAAATGATAAAGGAGACGTTCTACCTATCTCATGGGAACCCAATATTGGCGGTAGATGAGAAAGTAGTGGCAAGGAGGTTCTTTGAGAAATGGACAGAGAAAGAGTACCCAAACACAAAGCAGCCTAAAGCCATTCTTATTGTATCTGCTCACTGGGAAACTCAAGTCCCCAGTGTCAGTGCTGTTGTTGATCACACCGATCTTATCTATGATATTGCTGAAGTCCCTCCTTGTACATTTCAGATCAAGTATCCAGCAGTGGGATCTCCAGAATTGGCAAGAAGGGTAGAAGAACTACTGAAAGAATCAGGGTACCAATGTGAAATAGATACAAAGAGAGGACTAGATCATGCATCATGGGTGCCTCTAATGCTGATGTATCCAAAAGCCAATATCCCTGTATGTCAGCTGTCAGTTCAGTCACATTTGGATGGCACACACCACTTTAATGTGGGAAGAGCATTGTCCCCTCTTAAAGAGGATGGTTATCTTATCATTGGATCTGGAGGTGCTGTTCATCCTTCTGATGATACCCCTCATTTTTATGATGGTGTTGCACCTTGGGCCGCTGAGTTTGATAACTGGCTAGAAGATGCTCTTACTAATGGAAGGTACGAAGATGTGAATAATTATAAAACAAAAGCACCAAACTGGGAACTAGCACATCCATTTCCAGAACACTTCTACCCGTTGATAGTGGCAATGGGTGCTTCAGGTGAAAACTCCAAGGCGGAGCTCATTCATCGCAGTTGGGATCATGGTACTCTTGGCTATGCCTCTTACAAGTTCACTTCCCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_365348.p1 GENE.S_Transcript_365348~~S_Transcript_365348.p1 ORF type:5prime_partial len:290 (-),score=59.11,LigB|PF02900.14|1.1e-49 S_Transcript_365348:108-977(-)
PPKKKKKKRKKRIMTLGKKMSEKEMIKETFYLSHGNPILAVDEKVVARRFFEKWTEKEYPNTKQPKAILIVSAHWETQVPSVSAVVDHTDLIYDIAEVPPCTFQIKYPAVGSPELARRVEELLKESGYQCEIDTKRGLDHASWVPLMLMYPKANIPVCQLSVQSHLDGTHHFNVGRALSPLKEDGYLIIGSGGAVHPSDDTPHFYDGVAPWAAEFDNWLEDALTNGRYEDVNNYKTKAPNWELAHPFPEHFYPLIVAMGASGENSKAELIHRSWDHGTLGYASYKFTSP*

Click here to download the sequence:
Link to NCBI Protein BLAST