Transcript Information: S_Transcript_366111.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value1E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.17398807626038
Condition 2: 8 Hour
Replicate 10.20118292752012
Replicate 20
Replicate 30.80437160773515
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_366111.p1 GENE.S_Transcript_366111~~S_Transcript_366111.p1 ORF type:3prime_partial len:106 (+),score=11.16 S_Transcript_366111:467-781(+)
ATGCTCAACGACCTGCATCCCAAGTATGGTAATGTGATAAATGCTATAAGATGCAAAACTCCATTCCCATCCTTCATGGAGGCTCAGTCTATGTTAACTCTTGAGGAAGACCGTTCAAACAAAGAAACTCACCACTCATCTAACCTCGCTACACCTTTGGCACCTACAGTGTTGTATGCTGGTCATAATGGACACACCGGACAACATAACAACTCCGTAAAGCCATCGACGAGGCATCAAAACTCTCATGGAAAGGGTAAAGGTAACTCCAAGGGATATAAAAGGAAAGGCCATCACCACAAAAATTCCAACCCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_366111.p1 GENE.S_Transcript_366111~~S_Transcript_366111.p1 ORF type:3prime_partial len:106 (+),score=11.16 S_Transcript_366111:467-781(+)
MLNDLHPKYGNVINAIRCKTPFPSFMEAQSMLTLEEDRSNKETHHSSNLATPLAPTVLYAGHNGHTGQHNNSVKPSTRHQNSHGKGKGNSKGYKRKGHHHKNSNP

Click here to download the sequence:
Link to NCBI Protein BLAST