Transcript Information: S_Transcript_368414.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18353793955297
Replicate 20.30431433872434
Replicate 30.12719128333518
Condition 2: 8 Hour
Replicate 10.73535828679769
Replicate 21.3885975017761
Replicate 30.88203507330957
Condition 3: 24 Hour
Replicate 11.0545805823045
Replicate 20.78151074401198
Replicate 31.3915610706271


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_368414.p1 GENE.S_Transcript_368414~~S_Transcript_368414.p1 ORF type:3prime_partial len:145 (+),score=35.66,UBN2_3|PF14244.2|1.4e-33 S_Transcript_368414:630-1061(+)
ATGGCTGCTGAAGTTTCTCACACTTCGAATTCTTTTGTTCTGGATTCAACTAATCCACTATTTTTCCACCCTGCTGATCACCCTGGCTTGGTTCTGGTTTCTAGTGCCTTTGATGGAAGAAGTTATGGAGCTTGGAAGAGGGCTTTGATGATAGCTTTGTCAGCTAAGAACAAGATATGCATGATAGATGGAACTTCTGTGAAACCTCTTTCTACTGCTCCTGATTACAGGCATTGGGAAAGATGTAATGATATGGTAATTTCTTGGATACTTAATTCATTAAGCAAAGACATAGCTGAGATTGTTTTGTATAATACCACTCCCAGGGAGATTTGGACTGAGCTGGAGGATAGATTTGGGAGATGCAATGGTGCACAACTGTATCATATGCAGTCTGATGTTAACAATTTGTCTCAAGGGACTTCTGATATT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_368414.p1 GENE.S_Transcript_368414~~S_Transcript_368414.p1 ORF type:3prime_partial len:145 (+),score=35.66,UBN2_3|PF14244.2|1.4e-33 S_Transcript_368414:630-1061(+)
MAAEVSHTSNSFVLDSTNPLFFHPADHPGLVLVSSAFDGRSYGAWKRALMIALSAKNKICMIDGTSVKPLSTAPDYRHWERCNDMVISWILNSLSKDIAEIVLYNTTPREIWTELEDRFGRCNGAQLYHMQSDVNNLSQGTSDI

Click here to download the sequence:
Link to NCBI Protein BLAST