Transcript Information: S_Transcript_369335.p1


Annotated TAIR IDAT3G22690.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8021347-8024534 | Reverse length=938
E-Value4E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.36453658661766
Replicate 20.7648495261445
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_369335.p1 GENE.S_Transcript_369335~~S_Transcript_369335.p1 ORF type:internal len:117 (+),score=18.32,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.8e+03,PPR|PF01535.16|0.0053,PPR|PF01535.16|1.3e-07,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|0.0017,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|0.026 S_Transcript_369335:3-350(+)
TCTCATGCTGTGTTATTGTACATACAAATGAGAAGGATGAGTGTTGTGCCAGGCAAGCATACATTTCCTTTTCTTTTGAAGGCGTGTTCGAACATGAAGTCGTTAATTGGGAGTAAACAGGTCCATTCCCAGGTGTTTAAACTTGGGTTGGATTTGGATTTGCATGTTGGTAATGGGTTGGTGAGGGGTTATAGTGTGTCAGGGGGTTTAGCCGATGCTCACCAAGTGTTTGATGAAATGCCTGAAAGGAATCTGAGGATTTGGACAAGTATGGTTTGTGGGTATGCTCAGAATGATTGTTTTAACGAGGCTCTGATGTTATTTAATCAAATGATTGCTTGTGGGGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_369335.p1 GENE.S_Transcript_369335~~S_Transcript_369335.p1 ORF type:internal len:117 (+),score=18.32,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.8e+03,PPR|PF01535.16|0.0053,PPR|PF01535.16|1.3e-07,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|0.14,PPR_2|PF13041.2|0.0017,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|0.026 S_Transcript_369335:3-350(+)
SHAVLLYIQMRRMSVVPGKHTFPFLLKACSNMKSLIGSKQVHSQVFKLGLDLDLHVGNGLVRGYSVSGGLADAHQVFDEMPERNLRIWTSMVCGYAQNDCFNEALMLFNQMIACGV

Click here to download the sequence:
Link to NCBI Protein BLAST