Transcript Information: S_Transcript_369480.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value4E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.96274423073004
Replicate 20.057009792138281
Replicate 31.143735571076
Condition 2: 8 Hour
Replicate 10.66125241293436
Replicate 20.75150912743268
Replicate 30.99143477232471
Condition 3: 24 Hour
Replicate 10.79025418312227
Replicate 20.46850256488573
Replicate 30.71690565492578


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_369480.p1 GENE.S_Transcript_369480~~S_Transcript_369480.p1 ORF type:complete len:387 (-),score=18.78,LRR_8|PF13855.2|5.5e+03,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|2.4e-07,LRR_8|PF13855.2|6.9,LRR_8|PF13855.2|2.1e-05,LRR_8|PF13855.2|0.23,LRRNT_2|PF08263.8|2.4e-10,LRRNT_2|PF08263.8|1.1e+04,LRR_4|PF12799.3|7.8,LRR_4|PF12799.3|1.4e+02,LRR_4|PF12799.3|0.084,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|11,LRR_4|PF12799.3|43,LRR_4|PF12799.3|2.1,LRR_1|PF00560.29|8.4e+03,LRR_1|PF00560.29|0.052,LRR_1|PF00560.29|1.9e+02,LRR_1|PF00560.29|4.8e+03,LRR_1|PF00560.29|3e+02,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5e+02,LRR_1|PF00560.29|9.7 S_Transcript_369480:80-1096(-)
ATGGCAACCAAACCAATCAAATCCTTTTATCACCTTATCCCTTTATTTCTCCTCATAATCTCATCTTCGTTATTTTCCCTTTGTCAATCAGCTGAACTTTGCAACCCAAATGACAAAAAAGCCCTTCTCCAATTCAAAAACGAGCTAGGCCCAAATTCTAGCTATTTTTCTTCGTGGCAACCCAACACTGATTGTTGCAAATCTTGGATCAATGTTGGGTGCCATGACCGAACCAACCGCGTTAAAATCCTCACCATCGGTCAGACCAACGAGCTATCCGGTCGAATCCCACCGATTGTAGGAAAATTAACCGGTCTAGAGATGCTCTTGTTCAATGACCTTCCTGGTCTAACCGGTTCCATCCCTTCATCCATCTCTTTGCTCACTAACCTTAATGATCTTGAACTGTTCCGGACCAATTTAACCGGTCCAATCCCAAGTTTTCTTGGCCGGCTCACGAAATTAACCATCCTCGACTTATCCGAAAACCGTCTTTCCGGCCTAATCCCAGTTTCACTTTCAAACCTCCCAAACCTTATCCAGCTCAAGCTCTTCAAGAACCAGCTCACCGGTTCAATCCCCGAGAGCTTCGGCTCGTTCAAGAAGTTATTACTCCTAGAGGCCTACGACAACCAGCTCTCCGGTTCAATTCCTAGGTCATTGAACCAAGCAGGATTCACTTGGTTGGACCTTTCGAGCAACCGGTTCAGCGGGGACGCGTCTTATTTGTTCAAGGGGAAAAAATTGATGTTGATATACTTGAGGAACAATACGTTGTCGTTTGACTTTTCAAATGTGGAGTTTTCTTCTAAATTACAAGCCATTGATGTGAGCCATAATATGATATATGGGTCACTCCCAAAAGAACTGGCTGATTTGAAGTTGAAGGTGTTTAATGTGAGCTCCAACCAGCTTTGTGGATCCATACCCGCTGGAAAGTGGGTCACCCGTTTTGGGGCTGATGCCTTTGCCCATAACAAGTGCCTTTGTGGTGCTCCTTTGACAGCTTGCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_369480.p1 GENE.S_Transcript_369480~~S_Transcript_369480.p1 ORF type:complete len:387 (-),score=18.78,LRR_8|PF13855.2|5.5e+03,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|2.4e-07,LRR_8|PF13855.2|6.9,LRR_8|PF13855.2|2.1e-05,LRR_8|PF13855.2|0.23,LRRNT_2|PF08263.8|2.4e-10,LRRNT_2|PF08263.8|1.1e+04,LRR_4|PF12799.3|7.8,LRR_4|PF12799.3|1.4e+02,LRR_4|PF12799.3|0.084,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|11,LRR_4|PF12799.3|43,LRR_4|PF12799.3|2.1,LRR_1|PF00560.29|8.4e+03,LRR_1|PF00560.29|0.052,LRR_1|PF00560.29|1.9e+02,LRR_1|PF00560.29|4.8e+03,LRR_1|PF00560.29|3e+02,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5e+02,LRR_1|PF00560.29|9.7 S_Transcript_369480:80-1096(-)
MATKPIKSFYHLIPLFLLIISSSLFSLCQSAELCNPNDKKALLQFKNELGPNSSYFSSWQPNTDCCKSWINVGCHDRTNRVKILTIGQTNELSGRIPPIVGKLTGLEMLLFNDLPGLTGSIPSSISLLTNLNDLELFRTNLTGPIPSFLGRLTKLTILDLSENRLSGLIPVSLSNLPNLIQLKLFKNQLTGSIPESFGSFKKLLLLEAYDNQLSGSIPRSLNQAGFTWLDLSSNRFSGDASYLFKGKKLMLIYLRNNTLSFDFSNVEFSSKLQAIDVSHNMIYGSLPKELADLKLKVFNVSSNQLCGSIPAGKWVTRFGADAFAHNKCLCGAPLTACK*

Click here to download the sequence:
Link to NCBI Protein BLAST