Transcript Information: S_Transcript_369574.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value7E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.28468115558084
Replicate 30
Condition 2: 8 Hour
Replicate 10.27516632667268
Replicate 20.28866901470615
Replicate 30.68760798725746
Condition 3: 24 Hour
Replicate 10.28186946439476
Replicate 20
Replicate 30.32544573425956


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_369574.p1 GENE.S_Transcript_369574~~S_Transcript_369574.p1 ORF type:internal len:155 (+),score=33.51,UBN2_3|PF14244.2|2.9e-42,Retrotrans_gag|PF03732.13|2.2e-07 S_Transcript_369574:1-462(+)
GAAACTTCATCTTCCATCGAACCTTCAAATCCTCTTTATCTTCATCCTTCAGATAATCCTGGTATGATTCTCATTACTAAACCTTTTGATGGCAATGGTTTTGGTTCATGGAAGAAAGCGTTTACAATCGCTTTGTCAGCTAAGAACAAGCTCGGCTTCGTTACTGGAAAAGTTCCTAAACCTGATTCTACTGATAAGAACTTCAGTCAATGGCAGCGTTGCAATGATATGATTACATCCTGGATTTTGAATGCCCTTTCTAGAGATATTGCTGAGAGTGTGATATATTCAGATTCAGCTCAAGATATCTGGAATGAACTTGATGATAGATATGGACAATCTAATGGACCTAAACTGTATCAGCTTCAAAAGGATTTATGCTCTATGTCTCAAGAAGGTATTGATATTGCAAGTTACTTCACTAAATTCAAGTCTATTTGTGATGAATTGACTGCACTTTCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_369574.p1 GENE.S_Transcript_369574~~S_Transcript_369574.p1 ORF type:internal len:155 (+),score=33.51,UBN2_3|PF14244.2|2.9e-42,Retrotrans_gag|PF03732.13|2.2e-07 S_Transcript_369574:1-462(+)
ETSSSIEPSNPLYLHPSDNPGMILITKPFDGNGFGSWKKAFTIALSAKNKLGFVTGKVPKPDSTDKNFSQWQRCNDMITSWILNALSRDIAESVIYSDSAQDIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELTALS

Click here to download the sequence:
Link to NCBI Protein BLAST