Transcript Information: S_Transcript_37.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value1E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.66741068928352
Replicate 21.1065975953612
Replicate 31.4453554924452
Condition 2: 8 Hour
Replicate 13.6099406806432
Replicate 24.2780024044618
Replicate 33.2742211054673
Condition 3: 24 Hour
Replicate 11.3011059132329
Replicate 22.1313929382145
Replicate 32.0557152179719


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_37.p1 GENE.S_Transcript_37~~S_Transcript_37.p1 ORF type:complete len:319 (+),score=48.33,UBN2_3|PF14244.2|1.5e-11,UBN2|PF14223.2|2.2e-11,UBN2_2|PF14227.2|7e-10 S_Transcript_37:660-1616(+)
ATGGTTGCTCCTCCTCCATCATCATCTGGTAGTGATGTTCCTCCTCTAACCCATATTGCTGCATCTGGTTCTGGCGTCTTTGCTTCTGTTCCTCTCTTTCCAGAACCCGGTTCTGGGGTGTTTGAGCAGCCCGGGTTCGTTACCCCGCCACGACCAACGCCTGGTCCTGTGGCCACGACAACCTCTTTTCCCTATTTTGCTTGGTCCAGCGCTTATCCTCTCCCTTCGCTTCCGCCTTCTCTCTTTCCCAACAGCCTCTATGAGCCCGGTGAGTTGAGTTCTGCTGTTCGTCCTCTGCCTCAATATGCTTCTGTTTCAATGGGTGTCTTCCCAAACTCCTTTGGTGGGCTCTCGTCGCCGGGTCTTCCTGCTATGGGCCATACTTTCCCTCCGGTGGCTGCACCCAATGTCACTAATCTTGTGACTACCATGCTTGCTACTGTCGAGGACTTCCTCTCTTGGCGAACCCAGTTCACTGCGTTCCTGGTCTCTCATGGTCTTCTGGGTTATGTTGATGGTTTGATCCGTCGTCCTCTCGAGTACTTCCGCGACACTCAAGGTATTCATTGTATCAATGCTGATTATCAATCTTGGCTTCGCATTGATCAAAGTATACGTTGTTGGTTGTATGCTACTCTGTCCAAAGAATTATTGGCTGAATTTCATAATGTTAATCATTCCTTTGATATTTGGACACACTTGCATACTCGTTTTAATACTGATAGTCTTGCCCGCTCCATTGAACTTAAGAGGTCTCTCACAATGTTACGTAAAATTGATCAACAAAGTATTGAGTTATATTTGCGTGATGTTAAGAAAATTGGCGATGCATTAGCTTCAATTCGGTGTCCTGTCTCTAATCAAGATTTAGTGCAATACACTTTAATGGGTTTGCCGTCGGAGTATGAGACTATGATGACCATATTACTTCACCAATTTGGAAATTTTGTTGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_37.p1 GENE.S_Transcript_37~~S_Transcript_37.p1 ORF type:complete len:319 (+),score=48.33,UBN2_3|PF14244.2|1.5e-11,UBN2|PF14223.2|2.2e-11,UBN2_2|PF14227.2|7e-10 S_Transcript_37:660-1616(+)
MVAPPPSSSGSDVPPLTHIAASGSGVFASVPLFPEPGSGVFEQPGFVTPPRPTPGPVATTTSFPYFAWSSAYPLPSLPPSLFPNSLYEPGELSSAVRPLPQYASVSMGVFPNSFGGLSSPGLPAMGHTFPPVAAPNVTNLVTTMLATVEDFLSWRTQFTAFLVSHGLLGYVDGLIRRPLEYFRDTQGIHCINADYQSWLRIDQSIRCWLYATLSKELLAEFHNVNHSFDIWTHLHTRFNTDSLARSIELKRSLTMLRKIDQQSIELYLRDVKKIGDALASIRCPVSNQDLVQYTLMGLPSEYETMMTILLHQFGNFVV*

Click here to download the sequence:
Link to NCBI Protein BLAST