Transcript Information: S_Transcript_370739.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21994215896843
Replicate 20.27350565567167
Replicate 30.38104826619009
Condition 2: 8 Hour
Replicate 10.44060723795729
Replicate 20.4622282776803
Replicate 30.70465611917294
Condition 3: 24 Hour
Replicate 10.63187679518248
Replicate 20.56191268371109
Replicate 30.10422332398808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_370739.p1 GENE.S_Transcript_370739~~S_Transcript_370739.p1 ORF type:complete len:242 (+),score=34.34,UBN2_3|PF14244.2|1.8e-34,Retrotrans_gag|PF03732.13|6e-09,UBN2|PF14223.2|0.0024,UBN2|PF14223.2|2.3 S_Transcript_370739:62-727(+)
ATGGAGATCAATTTAGCAACTAAGAGGAAACTTGGATTTGTGACAGGTACAGTTCTTAAGCCTACTATTAATGTTGAGGCTGAACAATGGGAGACATGCAATAGTATGGCAATTGCTTGGTTAATGAATTATGTTTCTGATACAATTGCTCAGTCTATCTTGTATATACCCACTGCTCGTGAGATTTGGTTGAGTCTTGAGAGAAGAATTTGTCTGAGTAATGGTTCTCGCAAATATAAGTTGAATAAGTCTACATATGAACTGAAACAATTGGGTACAACCATTAGTGATTACTATACTAGATTCCAGAGTATTTGGGAAGAATTAGATTCTATGTCTGAATTACCTCCTATCAGTCAAACTAATGCTGAGGTGAATGCCTTTATCACTGCCCTTGCTAAACAGCAAAGTGAAGTACATCTATTTCAGTTCTTGAATGGTTTAGATGACATATATGGTACTCTAAGAAGCAATGTTCTAATGAGGAACCCTTTAGCCACTGTTGAAGACGCTTGCTCTATTATTCAACAAGAAGAATCTCAGAAAGACATCTTGGATCATTCTGAAATTAGATCTGAATCTAATATTTATATAGCAAGCAAAGTAATCTCACATGTGGTAAATGTGGGAATAAAGGTCATGATATGGCTAGATGCTGGCATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_370739.p1 GENE.S_Transcript_370739~~S_Transcript_370739.p1 ORF type:complete len:242 (+),score=34.34,UBN2_3|PF14244.2|1.8e-34,Retrotrans_gag|PF03732.13|6e-09,UBN2|PF14223.2|0.0024,UBN2|PF14223.2|2.3 S_Transcript_370739:62-727(+)
MEINLATKRKLGFVTGTVLKPTINVEAEQWETCNSMAIAWLMNYVSDTIAQSILYIPTAREIWLSLERRICLSNGSRKYKLNKSTYELKQLGTTISDYYTRFQSIWEELDSMSELPPISQTNAEVNAFITALAKQQSEVHLFQFLNGLDDIYGTLRSNVLMRNPLATVEDACSIIQQEESQKDILDHSEIRSESNIYIASKVISHVVNVGIKVMIWLDAGM*

Click here to download the sequence:
Link to NCBI Protein BLAST