Transcript Information: S_Transcript_370980.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.41101160208773
Replicate 20.76666064099472
Replicate 30.4984523265838
Condition 2: 8 Hour
Replicate 10.57636190046305
Replicate 20.69102235180623
Replicate 30.32920227961361
Condition 3: 24 Hour
Replicate 10.50605907700218
Replicate 20.70004051201073
Replicate 30.58429446498338


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_370980.p1 GENE.S_Transcript_370980~~S_Transcript_370980.p1 ORF type:complete len:259 (-),score=48.65,UBN2_3|PF14244.2|2.2e-45,Retrotrans_gag|PF03732.13|2.1e-10 S_Transcript_370980:69-845(-)
ATGGCAACTTCTTCATCTGAAAATACAGCTCATTCTAATCAAGTTACTATTGATGTCAATGATGAACTTTATATTCATCATTCGGATGTTTCACATAGCTTTACTCTTGCATCGAGGAAGTTTAATGGTGATAATTTTGGAGAATGGAAAAGGTCAGCAGAGATCACCTTGAGTGCTAAAAACAAACTCGGTTTTGTTAAAGGTACATGTAAGAAGCCTGAAGATACTTCTCTTCACTTGAATCATTGGGAGAGATGCAATAATCTGGTAATATCCTGGATTTTACATTCTGTTGAGCCTGATATTGCTAGAAGCATTCTTTATTACTCTACTGCTGCTGAAATTTGGACTGAACTACATGATCGTTATTCACATTCAAATGCTCCTAGGAAGTATCAAGTTCATAATCACATTGCTTCAATTGCTCAAGGAAATAGATCAGTGACAGACTATTATACAGAATTAAAGACCTCTTGGGATGAATATATGTCTTTGATCAATTTGCCAGCATGTACTTGTGGTAGTGGCAATGCTTTTATGGATATTCTTCAAGAACAACAATTACTTCAGTTTCTTCTAAAGCTAAATGATGATTTCAAAACTGCAAGAGGCAATATACTTATGAGACAGCCATTACCAACTCTGAGTCATGCTTATAGGCTGATTTTACAAGAAGAGAAGCAAAGAGAATGTTCTAATTCTTTCTCCCTTGGGTCTGATTCTGCTGCATTAGATTCGCTAGGTTTGACATTTGTGGTCAAAGATAATAAAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_370980.p1 GENE.S_Transcript_370980~~S_Transcript_370980.p1 ORF type:complete len:259 (-),score=48.65,UBN2_3|PF14244.2|2.2e-45,Retrotrans_gag|PF03732.13|2.1e-10 S_Transcript_370980:69-845(-)
MATSSSENTAHSNQVTIDVNDELYIHHSDVSHSFTLASRKFNGDNFGEWKRSAEITLSAKNKLGFVKGTCKKPEDTSLHLNHWERCNNLVISWILHSVEPDIARSILYYSTAAEIWTELHDRYSHSNAPRKYQVHNHIASIAQGNRSVTDYYTELKTSWDEYMSLINLPACTCGSGNAFMDILQEQQLLQFLLKLNDDFKTARGNILMRQPLPTLSHAYRLILQEEKQRECSNSFSLGSDSAALDSLGLTFVVKDNKV*

Click here to download the sequence:
Link to NCBI Protein BLAST