Transcript Information: S_Transcript_371213.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33266251543976
Replicate 20.68946217367234
Replicate 30.57633550261252
Condition 2: 8 Hour
Replicate 10.13328368948208
Replicate 20.27964810799658
Replicate 31.0657923802491
Condition 3: 24 Hour
Replicate 10.40959156544864
Replicate 20.42494646705651
Replicate 30.31527555506395


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_371213.p1 GENE.S_Transcript_371213~~S_Transcript_371213.p1 ORF type:3prime_partial len:160 (+),score=17.80,gag_pre-integrs|PF13976.2|9e-15 S_Transcript_371213:102-578(+)
ATGTGTCCACACCGTGATTGGCTTGACTCTTATGAGAGTGTTAACGGTGGCATCGTTTATATGGGTAACAATGCTACATATAAGGTTGTCGGGAGAGGGAATATTAAAATTAAAGTTCATGATGGTACCACCCGTACTCTGTCAGGTGTTAGACATGTTCCCGACCTTCATAGAAATATTATATCTCTTGGTACCCTTGAATCATTGGGATGTCACTACTCCACTCAAGGTGGAGTTCTTAAGGTGTCTAAGGGGTCATTTGTTTTGATGAAAGGCTCTAGAATTGGGTCTTTATATGTGTTGCAAGGTTCTACCATCACCGGTTCCACCGCCATTGCTTCAGCATCTAGTACCACTGAATTCAAACTATGGCATATGCGTTTGGGACATATGGGTGAGAAAGGCATGGATATTCTCTGTAAGCATGGTTTGCTTGGCTCAACTAATAATTGCGAAATTGATTTTTGTGAGCATTGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_371213.p1 GENE.S_Transcript_371213~~S_Transcript_371213.p1 ORF type:3prime_partial len:160 (+),score=17.80,gag_pre-integrs|PF13976.2|9e-15 S_Transcript_371213:102-578(+)
MCPHRDWLDSYESVNGGIVYMGNNATYKVVGRGNIKIKVHDGTTRTLSGVRHVPDLHRNIISLGTLESLGCHYSTQGGVLKVSKGSFVLMKGSRIGSLYVLQGSTITGSTAIASASSTTEFKLWHMRLGHMGEKGMDILCKHGLLGSTNNCEIDFCEHC

Click here to download the sequence:
Link to NCBI Protein BLAST